Summary
of SNPs detected on Turmeric & Ginger EST
libraries |
Results |
Turmeric
EST libraries |
 Ginger
EST libraries |
| Total
No. of ESTs |
12583 |
38139 |
| Total
sequences analysed |
10650 |
33249 |
| No.
of contigs |
3406 |
7100 |
| Total
SNPs detected |
30105 |
58861 |
| Total
consensus size (bp) |
2500637
bp |
6748841
bp |
| Frequency
of SNP per 100bp |
1/91
bp |
0.87/100
bp |
| Transitions |
11492 |
25953 |
| Tranversions |
16107 |
25961 |
| Indel |
2506 |
6947 |
| |
|
|
| |
Results |
Turmeric
Tissue based EST libraries |
Leaves |
Rhizome |
| Total
No. of ESTs |
5723
|
6870 |
| Total
sequences analysed |
4741 |
5909 |
| No.
of contigs |
1632 |
1774 |
| Total
SNPs detected |
16264 |
13841 |
| Total
consensus size (bp) |
1173735 |
1326902 |
| Frequency
of SNP per 100bp |
1.39 |
1.04 |
| Transitions |
5875 |
5617 |
| Tranversions |
9117 |
6990 |
| Indel |
1272 |
1234 |
| |
|
|
| Results |
Ginger
Tissue based EST libraries (zingiber
offcinale) |
|
Leaves |
Rhizome
|
Root
|
| Total
No. of ESTs |
13274 |
12763 |
12092 |
| Total
sequences analysed |
11307 |
10123 |
10475 |
| No.
of contigs |
2660 |
2921 |
2972 |
| Total
SNPs detected |
16046 |
28809 |
19171 |
| Total
consensus size (bp) |
2555383 |
2668324 |
2332434 |
| Frequency
of SNP per 100bp |
0.63 |
1.08 |
0.82 |
| Transitions |
6805 |
13433 |
6845 |
| Tranversions |
7258 |
12249 |
10402 |
| Indel |
1983 |
3127 |
1924 |
| |
|
|
|
| Results |
Ginger
Tissue based EST libraries (zingiber
zerumbet) |
Leaves |
| Total
No. of ESTs |
71 |
| Total
sequences analysed |
16 |
| No.
of contigs |
8 |
| Total
SNPs detected |
53 |
| Total
consensus size (bp) |
2562 |
| Frequency
of SNP per 100bp |
2.07 |
| Transitions |
19 |
| Tranversions |
22 |
| Indel |
12 |
| |
|
