| |
|
||||||||||||
RESULTS SUMMARY
View contig list
Total sequences analysed = 33249
Sequences sorted into 7100 contigs and 0 singletons
Total SNPs detected = 58861
Total consensus size = 6748841 bp
SNP frequency = 0.87/100 bp
Smallest contig = 2 sequences
Total transitions = 25953
Total transversions = 25961
Total indels = 6947
3483 contigs containing 2 sequences
2783(79.90)% of these contigs contain snps
with a total of 17391 snps
865 contigs containing 3 sequences
838(96.88)% of these contigs contain snps
with a total of 15244 snps
928 contigs containing 4 sequences
904(97.41)% of these contigs contain snps
with a total of 18859 snps
379 contigs containing 5 sequences
203(53.56)% of these contigs contain snps
with a total of 1909 snps
325 contigs containing 6 sequences
237(72.92)% of these contigs contain snps
with a total of 2372 snps
213 contigs containing 7 sequences
55(25.82)% of these contigs contain snps
with a total of 339 snps
174 contigs containing 8 sequences
69(39.66)% of these contigs contain snps
with a total of 467 snps
125 contigs containing 9 sequences
22(17.60)% of these contigs contain snps
with a total of 122 snps
110 contigs containing 10 sequences
32(29.09)% of these contigs contain snps
with a total of 211 snps
72 contigs containing 11 sequences
29(40.28)% of these contigs contain snps
with a total of 152 snps
59 contigs containing 12 sequences
28(47.46)% of these contigs contain snps
with a total of 247 snps
39 contigs containing 13 sequences
6(15.38)% of these contigs contain snps
with a total of 32 snps
33 contigs containing 14 sequences
10(30.30)% of these contigs contain snps
with a total of 50 snps
42 contigs containing 15 sequences
11(26.19)% of these contigs contain snps
with a total of 37 snps
26 contigs containing 16 sequences
9(34.62)% of these contigs contain snps
with a total of 55 snps
20 contigs containing 17 sequences
10(50.00)% of these contigs contain snps
with a total of 84 snps
20 contigs containing 18 sequences
2(10.00)% of these contigs contain snps
with a total of 5 snps
18 contigs containing 19 sequences
7(38.89)% of these contigs contain snps
with a total of 31 snps
14 contigs containing 20 sequences
8(57.14)% of these contigs contain snps
with a total of 58 snps
8 contigs containing 21 sequences
6(75.00)% of these contigs contain snps
with a total of 34 snps
8 contigs containing 22 sequences
6(75.00)% of these contigs contain snps
with a total of 48 snps
12 contigs containing 23 sequences
5(41.67)% of these contigs contain snps
with a total of 40 snps
11 contigs containing 24 sequences
6(54.55)% of these contigs contain snps
with a total of 27 snps
8 contigs containing 25 sequences
5(62.50)% of these contigs contain snps
with a total of 36 snps
9 contigs containing 26 sequences
6(66.67)% of these contigs contain snps
with a total of 34 snps
5 contigs containing 27 sequences
3(60.00)% of these contigs contain snps
with a total of 28 snps
6 contigs containing 28 sequences
6(100.00)% of these contigs contain snps
with a total of 58 snps
7 contigs containing 29 sequences
5(71.43)% of these contigs contain snps
with a total of 36 snps
3 contigs containing 30 sequences
2(66.67)% of these contigs contain snps
with a total of 7 snps
4 contigs containing 31 sequences
3(75.00)% of these contigs contain snps
with a total of 36 snps
5 contigs containing 32 sequences
5(100.00)% of these contigs contain snps
with a total of 51 snps
3 contigs containing 33 sequences
2(66.67)% of these contigs contain snps
with a total of 14 snps
3 contigs containing 34 sequences
2(66.67)% of these contigs contain snps
with a total of 10 snps
2 contigs containing 35 sequences
2(100.00)% of these contigs contain snps
with a total of 7 snps
4 contigs containing 36 sequences
3(75.00)% of these contigs contain snps
with a total of 31 snps
2 contigs containing 37 sequences
2(100.00)% of these contigs contain snps
with a total of 43 snps
1 contigs containing 38 sequences
1(100.00)% of these contigs contain snps
with a total of 8 snps
2 contigs containing 39 sequences
(0.00)% of these contigs contain snps
1 contigs containing 41 sequences
1(100.00)% of these contigs contain snps
with a total of 6 snps
3 contigs containing 42 sequences
2(66.67)% of these contigs contain snps
with a total of 16 snps
2 contigs containing 43 sequences
2(100.00)% of these contigs contain snps
with a total of 44 snps
2 contigs containing 44 sequences
1(50.00)% of these contigs contain snps
with a total of 7 snps
3 contigs containing 45 sequences
3(100.00)% of these contigs contain snps
with a total of 23 snps
2 contigs containing 47 sequences
2(100.00)% of these contigs contain snps
with a total of 12 snps
2 contigs containing 48 sequences
2(100.00)% of these contigs contain snps
with a total of 33 snps
2 contigs containing 49 sequences
2(100.00)% of these contigs contain snps
with a total of 30 snps
3 contigs containing 50 sequences
2(66.67)% of these contigs contain snps
with a total of 23 snps
3 contigs containing 51 sequences
3(100.00)% of these contigs contain snps
with a total of 38 snps
1 contigs containing 53 sequences
1(100.00)% of these contigs contain snps
with a total of 23 snps
3 contigs containing 54 sequences
3(100.00)% of these contigs contain snps
with a total of 73 snps
3 contigs containing 55 sequences
3(100.00)% of these contigs contain snps
with a total of 14 snps
3 contigs containing 58 sequences
3(100.00)% of these contigs contain snps
with a total of 46 snps
1 contigs containing 59 sequences
1(100.00)% of these contigs contain snps
with a total of 17 snps
1 contigs containing 60 sequences
1(100.00)% of these contigs contain snps
with a total of 31 snps
1 contigs containing 61 sequences
1(100.00)% of these contigs contain snps
with a total of 15 snps
2 contigs containing 66 sequences
2(100.00)% of these contigs contain snps
with a total of 19 snps
3 contigs containing 67 sequences
3(100.00)% of these contigs contain snps
with a total of 29 snps
1 contigs containing 78 sequences
1(100.00)% of these contigs contain snps
with a total of 8 snps
1 contigs containing 81 sequences
1(100.00)% of these contigs contain snps
with a total of 20 snps
1 contigs containing 86 sequences
1(100.00)% of these contigs contain snps
with a total of 12 snps
1 contigs containing 94 sequences
1(100.00)% of these contigs contain snps
with a total of 19 snps
1 contigs containing 95 sequences
1(100.00)% of these contigs contain snps
with a total of 11 snps
1 contigs containing 98 sequences
1(100.00)% of these contigs contain snps
with a total of 10 snps
1 contigs containing 118 sequences
1(100.00)% of these contigs contain snps
with a total of 13 snps
1 contigs containing 124 sequences
1(100.00)% of these contigs contain snps
with a total of 8 snps
1 contigs containing 143 sequences
1(100.00)% of these contigs contain snps
with a total of 8 snps
1 contigs containing 161 sequences
1(100.00)% of these contigs contain snps
with a total of 12 snps
1 contigs containing 171 sequences
1(100.00)% of these contigs contain snps
with a total of 28 snps
|
|
||||||||||||||||||||||||||
| ©
2008 Bioinformatics centre,IISR,Calicut. Acknowledged to Plant Biotechnology Centre
Australia, DPI Comments/suggestions to DISC disc@spices.res.in Best viewed at 800x600+ |
||||||||||||||||||||||||||