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RESULTS SUMMARY
View contig list


  Total sequences analysed = 10584

  Sequences sorted into 3045 contigs and 0 singletons

  Total SNPs detected = 30819

  Total consensus size = 2767847 bp

  SNP frequency = 1.11/100 bp

  Smallest contig = 2 sequences

  Total transitions = 13116

  Total transversions = 15037

  Total indels = 2666

  1901 contigs containing 2 sequences

    1656(87.11)% of these contigs contain snps

    with a total of 12697 snps

  328 contigs containing 3 sequences

    323(98.48)% of these contigs contain snps

    with a total of 7694 snps

  354 contigs containing 4 sequences

    352(99.44)% of these contigs contain snps

    with a total of 7953 snps

  110 contigs containing 5 sequences

    71(64.55)% of these contigs contain snps

    with a total of 758 snps

  121 contigs containing 6 sequences

    89(73.55)% of these contigs contain snps

    with a total of 918 snps

  42 contigs containing 7 sequences

    15(35.71)% of these contigs contain snps

    with a total of 75 snps

  38 contigs containing 8 sequences

    18(47.37)% of these contigs contain snps

    with a total of 86 snps

  14 contigs containing 9 sequences

    3(21.43)% of these contigs contain snps

    with a total of 37 snps

  24 contigs containing 10 sequences

    8(33.33)% of these contigs contain snps

    with a total of 30 snps

  22 contigs containing 11 sequences

    10(45.45)% of these contigs contain snps

    with a total of 99 snps

  14 contigs containing 12 sequences

    6(42.86)% of these contigs contain snps

    with a total of 62 snps

  12 contigs containing 13 sequences

    3(25.00)% of these contigs contain snps

    with a total of 16 snps

  9 contigs containing 14 sequences

    4(44.44)% of these contigs contain snps

    with a total of 39 snps

  9 contigs containing 15 sequences

    5(55.56)% of these contigs contain snps

    with a total of 21 snps

  5 contigs containing 16 sequences

    3(60.00)% of these contigs contain snps

    with a total of 49 snps

  5 contigs containing 17 sequences

    3(60.00)% of these contigs contain snps

    with a total of 17 snps

  4 contigs containing 18 sequences

    3(75.00)% of these contigs contain snps

    with a total of 9 snps

  2 contigs containing 19 sequences

    1(50.00)% of these contigs contain snps

    with a total of 4 snps

  3 contigs containing 20 sequences

    1(33.33)% of these contigs contain snps

    with a total of 7 snps

  3 contigs containing 21 sequences

    1(33.33)% of these contigs contain snps

    with a total of 2 snps

  1 contigs containing 22 sequences

    1(100.00)% of these contigs contain snps

    with a total of 31 snps

  1 contigs containing 23 sequences

    1(100.00)% of these contigs contain snps

    with a total of 8 snps

  1 contigs containing 24 sequences

    1(100.00)% of these contigs contain snps

    with a total of 2 snps

  1 contigs containing 25 sequences

    1(100.00)% of these contigs contain snps

    with a total of 22 snps

  4 contigs containing 26 sequences

    3(75.00)% of these contigs contain snps

    with a total of 37 snps

  1 contigs containing 27 sequences

    1(100.00)% of these contigs contain snps

    with a total of 17 snps

  1 contigs containing 28 sequences

    1(100.00)% of these contigs contain snps

    with a total of 3 snps

  2 contigs containing 30 sequences

    2(100.00)% of these contigs contain snps

    with a total of 4 snps

  2 contigs containing 31 sequences

    1(50.00)% of these contigs contain snps

    with a total of 5 snps

  1 contigs containing 32 sequences

    1(100.00)% of these contigs contain snps

    with a total of 9 snps

  1 contigs containing 33 sequences

    1(100.00)% of these contigs contain snps

    with a total of 5 snps

  1 contigs containing 35 sequences

    1(100.00)% of these contigs contain snps

    with a total of 10 snps

  2 contigs containing 36 sequences

    2(100.00)% of these contigs contain snps

    with a total of 11 snps

  1 contigs containing 38 sequences

    1(100.00)% of these contigs contain snps

    with a total of 18 snps

  2 contigs containing 42 sequences

    2(100.00)% of these contigs contain snps

    with a total of 9 snps

  1 contigs containing 65 sequences

    1(100.00)% of these contigs contain snps

    with a total of 7 snps

  1 contigs containing 71 sequences

    1(100.00)% of these contigs contain snps

    with a total of 19 snps

  1 contigs containing 112 sequences

    1(100.00)% of these contigs contain snps

    with a total of 29 snps


               
               
               
© 2008 Bioinformatics centre,IISR,Calicut. Acknowledged to Plant Biotechnology Centre Australia, DPI
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