Genome size comparison of P. capsici of IISR strains with already sequenced P. capsici infecting water melon (JGI), P. infestans, P. ramorum, P. sojae
Percentage similarity with reference Phytophthora capsici of JGI
Uniqueness b/w both samples (98-93 & 05-06)
Organism |
Genome Size (Mb) |
Number of genes |
|---|---|---|
| P. capsici (IISR 98-93) | 46.1 |
13068 |
| P. capsici (IISR 05-06) | 63.8 |
16356 |
| P. capsici (JGI) | 64 |
19,805 |
P. infestans |
240 |
22658 |
P. sojae |
95 |
19027 |
p. ramorum |
65 |
15743 |
Percentage similarity with reference Phytophthora capsici of JGI
Properties |
05-06 Isolate |
98-93 Isolate |
|---|---|---|
| Similarity with Phytophthora capsici Genome | 95.35% |
87.90% |
| No of bases mapped | 92.27% |
79.07% |
| unmapped | 3.65% |
12.10% |
No of Repeats |
60791 (12.82%) |
14827 (5.26%) |
No of Chimeric |
30002 (6.33%) |
22573 (8.01%) |
No. of SNPs |
113068 |
37839 |
Uniqueness b/w both samples (98-93 & 05-06)
Properties |
b/w both samples (98-93 & 05-06) |
|---|---|
| Common gene counts | 2039 |
| Gene’s unique in sample 98-93 | 6095 |
| Gene’s unique in sample 05-06 | 4034 |