Sugarcane yellow leaf virus

Family   : Luteoviridae
Genus : Polerovirus
Acronym : SCYLV

Introduction

Yellow leaf (YL) caused by Sugarcane yellow leaf virus (SCYLV) was first reported in India during 1999 and in recent years it has attained epidemic proportions, seriously affecting sugarcane production in the country. Several physiological parameters, photosynthetic rate (A), stomatal conductance (gs) and SPAD metre values were significantly reduced in cultivars severely infected with ScYLV. Virus-infected cultivars exhibited significant reduction in growth/yield parameters, viz. stalk height, stalk thickness and number of internodes. Plant growth reductions were found to be 42.9, 42.3 and 38.9% in susceptible cultivars CoPant 84211, Co 86032 and CoC 671, respectively. In addition to reduction in stalk weight, height and girth, YL disease also reduced juice yield in the affected canes up to 34.15%. Similarly, comparison of diseased (virus-infected) and virus-free plants derived through meristem culture also revealed a drastic reduction in cane growth/physiological parameters and juice yield due to virus infection.

Major Diseases

Yellow leaf disease

Geographical Distribution

All sugarcane growing regions

Particle Morphology

Isometric particles

Transmission Method

By sugarcane aphid, Melanaphis sacchari in persistent manner.

Detection

ELISA, RT-PCR

Host Range and Symptomatology

SugarcaneYellow leaf

References

1 Bharathi, V.; Reddy, L. K., Mixed infection of Sugarcane streak mosaic and Sugarcane yellow leaf virus infecting sugarcane crops in Andhra Pradesh, India.. 2007, International Journal of Agricultural Sciences, 3, 1, pp 68-72.
2 Bharathi, V.; Reddy, L. K.; Nagamalleswari, P., Mixed infection of Sugarcane streak mosaic and Sugarcane yellow leaf virus infecting sugarcane crops in A.P., India.. 2006, Indian Sugar, 56, 5, pp 37-42.
3 Chinnaraja, C.; Viswanathan, R., Quantification of sugarcane yellow leaf virus in sugarcane following transmission through aphid vector, Melanaphis sacchari.. 2015, VirusDisease, 26, 4, pp 237-242.
4 Chinnaraja, C.; Viswanathan, R.; Karuppaiah, R.; Bagyalakshmi, K.; Malathi, P.; Parameswari, B., Complete genome characterization of Sugarcane yellow leaf virus from India: evidence for RNA recombination.. 2013, European Journal of Plant Pathology, 135, 2, pp 335-349.
5 Deepti Singh; Rao, G. P., Molecular detection of two strains of Sugarcane yellow leaf virus in India and their secondary spread in nature through aphids.. 2011, Acta Phytopathologica et Entomologica Hungarica, 46, 1, pp 17-26.
6 Deepti Singh; Tewari, A. K.; Rao, G. P.; Karuppaiah, R.; Viswanathan, R.; Meenakshi Arya; Baranwal, V. K., RT-PCR/PCR analysis detected mixed infection of DNA and RNA viruses infecting sugarcane crops in different states of India.. 2009, Sugar Tech, 11, 4, pp 373-380.
7 Gaur, R. K.; Rao, G. P.; Singh, M.; Lehrer, A., Complete genome sequence of an Indian isolate of Sugarcane yellow leaf virus.. 2008, Journal of Plant Pathology, 90, 1, pp 144.
8 Hemalatha, T. M.; Kumar, M. H.; Afsar, S.; Reddy, B. V. B.; Rao, M. S., Molecular detection of Sugarcane Yellow Leaf Virus in popularly grown sugarcane varieties in Andhra Pradesh and characterization of the virus from the sugarcane variety 2003V46.. 2014, Journal of Mycology and Plant Pathology, 44, 4, pp 442-446.
9 Narayan Rishi, Significant plant virus diseases in India and a glimpse of modern disease management technology.. 2009, Journal of General Plant Pathology, 75, 1, pp 1-18.
10 Rao, G. P.; Gaur, R. K.; Singh, M.; Viswanathan, R.; Chandrasena, G.; Dharamwardhane, N. M. W. N., Occurrence of sugarcane yellow leaf virus in India and Sri Lanka.. 2001, International Society of Sugar Cane Technologists. Proceedings of the XXIV Congress, Brisbane, Australia, 17-21 September 2001. Volume 2, 1, pp 469-470.
11 Solomon, S., Special Issue: The Indian sugar industries.. 2011, Sugar Tech, 13, 4, pp 253-416.
12 Viswanathan, R., Varietal degeneration in sugarcane and its management in India.. 2016, Sugar Tech, 18, 1, pp 1-7.
13 Viswanathan, R., Sustainable ecofriendly disease management systems in sugarcane production under the changing climate.. 2013, Journal of Mycology and Plant Pathology, 43, 1, pp 12-27.
14 Viswanathan, R.; Balamuralikrishnan, M., Detection of sugarcane yellow leaf virus, the causal agent of yellow leaf syndrome in sugarcane by DAS-ELISA.. 2004, Archives of Phytopathology and Plant Protection, 37, 3, pp 169-176.
15 Viswanathan, R.; Balamuralikrishnan, M.; Karuppaiah, R., Identification of three genotypes of sugarcane yellow leaf virus causing yellow leaf disease from India and their molecular characterization.. 2008, Virus Genes, 37, 3, pp 368-379.
16 Viswanathan, R.; Chinnaraja, C.; Malathi, P.; Gomathi, R.; Rakkiyappan, P.; Neelamathi, D.; Ravichandran, V., Impact of Sugarcane yellow leaf virus (ScYLV) infection on physiological efficiency and growth parameters of sugarcane under tropical climatic conditions in India.. 2014, Acta Physiologiae Plantarum, 36, 7, pp 1805-1822.
17 Viswanathan, R.; Chinnaraja, C.; Parameswari, B.; Chhabra, M. L., Status of yellow leaf resistance in sugarcane germplasm and parental clones at Sugarcane Breeding Institute, India.. 2016, Cooperative Sugar, 47, 9, pp 23-36.
18 Viswanathan, R.; Karuppaiah, R., Distribution pattern of RNA viruses causing mosaic symptoms and yellow leaf in Indian sugarcane varieties.. 2010, Sugar Cane International, 28, 5, pp 202-205.
19 Viswanathan, R.; Padmanaban, P.; Mohanraj, D.; Sundar, A. R.; Premachandran, M. N., Occurrence of yellow leaf syndrome of sugarcane in India.. 2002, Indian Phytopathology, 55, 3, pp 353-354.
20 Viswanathan, R.; Rao, G. P., Disease scenario and management of major sugarcane diseases in India.. 2011, Sugar Tech, 13, 4, pp 336-353.

Sequences

Complete Sequence
 AY236971.1 Sugarcane yellow leaf virus, complete genome.
 KF680098.1 Sugarcane yellow leaf virus isolate CBLK97154, complete genome.
 JF925155.1 Sugarcane yellow leaf virus isolate IND4, complete genome.
 JF925154.1 Sugarcane yellow leaf virus isolate IND3, complete genome.
 JF925153.1 Sugarcane yellow leaf virus isolate IND2, complete genome.
 JF925152.1 Sugarcane yellow leaf virus isolate IND1, complete genome.
Partial Sequence
 FJ430673.1 Sugarcane yellow leaf virus isolate MP-IND-2 aphid transmission factor gene, partial cds; and coat protein and movement protein genes, complete cds.
 FJ430672.1 Sugarcane yellow leaf virus isolate MP-IND-1 aphid transmission factor gene, partial cds; and coat protein and movement protein genes, complete cds.
 FJ430671.1 Sugarcane yellow leaf virus isolate UP-IND-3 aphid transmission factor gene, partial cds; and coat protein and movement protein genes, complete cds.
 FJ430670.1 Sugarcane yellow leaf virus isolate UP-IND-2 aphid transmission factor gene, partial cds; and coat protein and movement protein genes, complete cds.
 FJ430669.1 Sugarcane yellow leaf virus isolate UP-IND-1 aphid transmission factor gene, partial cds; and coat protein and movement protein genes, complete cds.
 FJ430668.1 Sugarcane yellow leaf virus isolate Pun-IND-2 aphid transmission factor gene, partial cds; and coat protein and movement protein genes, complete cds.
 FJ430667.1 Sugarcane yellow leaf virus isolate Pun-IND-1 aphid transmission factor gene, partial cds; and coat protein and movement protein genes, complete cds.
 FJ430666.1 Sugarcane yellow leaf virus isolate Hy-IND-2 aphid transmission factor gene, partial cds; and coat protein and movement protein genes, complete cds.
 FJ430665.1 Sugarcane yellow leaf virus isolate Hy-IND-1 aphid transmission factor gene, partial cds; and coat protein and movement protein genes, complete cds.
 FJ430664.1 Sugarcane yellow leaf virus isolate TN-IND-2 aphid transmission factor gene, partial cds; and coat protein and movement protein genes, complete cds.
 FJ430663.1 Sugarcane yellow leaf virus isolate TN-IND-1 aphid transmission factor gene, partial cds; and coat protein and movement protein genes, complete cds.
 FJ430662.1 Sugarcane yellow leaf virus isolate KER-IND-2 aphid transmission factor gene, partial cds; and coat protein and movement protein genes, complete cds.
 FJ430661.1 Sugarcane yellow leaf virus isolate KER-IND-1 aphid transmission factor gene, partial cds; and coat protein and movement protein genes, complete cds.
 EU647743.1 Sugarcane yellow leaf virus isolate CBV94101TN putative aphid transmission factor mRNA, partial cds; and capsid protein and movement protein mRNAs, complete cds.
 EU647742.1 Sugarcane yellow leaf virus isolate CBmc86032 putative aphid transmission factor mRNA, partial cds; and capsid protein and movement protein mRNAs, complete cds.
 EU647741.1 Sugarcane yellow leaf virus isolate CBMadhu putative aphid transmission factor mRNA, partial cds; and capsid protein and movement protein mRNAs, complete cds.
 EU647740.1 Sugarcane yellow leaf virus isolate CBS767 truncated capsid protein/putative aphid transmission factor and truncated movement protein mRNAs, complete cds.
 EU647739.1 Sugarcane yellow leaf virus isolate CBvpt86010 putative aphid transmission factor mRNA, partial cds; and capsid protein and movement protein mRNAs, complete cds.
 EU647738.1 Sugarcane yellow leaf virus isolate CBC81129 putative aphid transmission factor mRNA, partial cds; and capsid protein and movement protein mRNAs, complete cds.
 EU647737.1 Sugarcane yellow leaf virus isolate CBS611 putative aphid transmission factor mRNA, partial cds; and capsid protein and movement protein mRNAs, complete cds.
 EU647736.1 Sugarcane yellow leaf virus isolate CBQ63 putative aphid transmission factor mRNA, partial cds; and capsid protein and movement protein mRNAs, complete cds.
 EU647735.1 Sugarcane yellow leaf virus isolate CBD1135 putative aphid transmission factor mRNA, partial cds; and capsid protein and movement protein mRNAs, complete cds.
 EU647734.1 Sugarcane yellow leaf virus isolate CBBT putative aphid transmission factor mRNA, partial cds; and capsid protein and movement protein mRNAs, complete cds.
 EU624502.1 Sugarcane yellow leaf virus isolate CBV92102 RNA-dependent RNA polymerase and multifunctional protein mRNAs, partial cds.
 EU624501.1 Sugarcane yellow leaf virus isolate CBLk97154 RNA-dependent RNA polymerase and multifunctional protein mRNAs, partial cds.
 EU624500.1 Sugarcane yellow leaf virus isolate CBmc86032 RNA-dependent RNA polymerase, multifunctional protein, coat protein, putative aphid transmission factor, and movement protein mRNAs, partial cds.
 EU624499.1 Sugarcane yellow leaf virus isolate CB671 RNA-dependent RNA polymerase and multifunctional protein mRNAs, partial cds.
 EU624498.1 Sugarcane yellow leaf virus isolate CBJn862035 RNA-dependent RNA polymerase and multifunctional protein mRNAs, partial cds.
 EU624497.1 Sugarcane yellow leaf virus isolate CB86032 RNA-dependent RNA polymerase and multifunctional protein mRNAs, partial cds.
 EU624496.1 Sugarcane yellow leaf virus isolate CB86010 RNA-dependent RNA polymerase and multifunctional protein mRNAs, partial cds.
 EF635946.1 Sugarcane yellow leaf virus isolate CBJn862035 putative aphid transmission factor mRNA, partial cds; and capsid protein and movement protein mRNAs, complete cds.
 EF635945.1 Sugarcane yellow leaf virus isolate CB94006 putative aphid transmission factor mRNA, partial cds; and capsid protein and movement protein mRNA, complete cds.
 EF635944.1 Sugarcane yellow leaf virus isolate CB93A53 putative aphid transmission factor mRNA, partial cds; and capsid protein and movement protein mRNA, complete cds.
 EF635943.1 Sugarcane yellow leaf virus isolate CBV94101AP putative aphid transmission factor mRNA, partial cds; and capsid protein and movement protein mRNAs, complete cds.
 EF635942.1 Sugarcane yellow leaf virus isolate CB6304 putative aphid transmission factor mRNA, partial cds; and capsid protein and movement protein mRNA, complete cds.
 EF635940.1 Sugarcane yellow leaf virus isolate CB85019 putative aphid transmission factor mRNA, partial cds; and capsid protein and movement protein mRNA, complete cds.
 EF635939.1 Sugarcane yellow leaf virus isolate CB94008 putative aphid transmission factor mRNA, partial cds; and capsid protein and movement protein mRNA, complete cds.
 EF635937.1 Sugarcane yellow leaf virus isolate CBLk97154 putative aphid transmission factor mRNA, partial cds; and capsid protein and movement protein mRNAs, complete cds.
 EF635936.1 Sugarcane yellow leaf virus isolate CBB38192 putative aphid transmission factor mRNA, partial cds; and capsid protein and movement protein mRNAs, complete cds.
 EF635935.1 Sugarcane yellow leaf virus isolate CBB38192 putative aphid transmission factor mRNA, partial cds; and capsid protein and movement protein mRNAs, complete cds.
 EF635934.1 Sugarcane yellow leaf virus isolate CBE86032 putative aphid transmission factor mRNA, partial cds; and capsid protein and movement protein mRNA, complete cds.
 EF635933.1 Sugarcane yellow leaf virus isolate CB86032 putative aphid transmission factor mRNA, partial cds; and capsid protein and movement protein mRNA, complete cds.
 EF635932.1 Sugarcane yellow leaf virus isolate CB86032 putative aphid transmission factor mRNA, partial cds; and capsid protein and movement protein mRNA, complete cds.
 EF635930.1 Sugarcane yellow leaf virus isolate CB671 putative aphid transmission factor mRNA, partial cds; and capsid protein and movement protein mRNA, complete cds.
 EU089689.1 Sugarcane yellow leaf virus isolate CB94005 read-through protein mRNA, partial cds; and coat protein and movement protein mRNAs, complete cds.
 EU089688.1 Sugarcane yellow leaf virus isolate CBAPHIDS read-through protein mRNA, partial cds; and coat protein and movement protein mRNAs, complete cds.
 EU089687.1 Sugarcane yellow leaf virus isolate CB99016 read-through protein mRNA, partial cds; and coat protein and movement protein mRNAs, complete cds.
 KF680097.1 Sugarcane yellow leaf virus isolate CB86032mc RNA silencing suppressor protein P0 gene, complete cds.
 KF680096.1 Sugarcane yellow leaf virus isolate CBSP811763 RNA silencing suppressor protein P0 gene, complete cds.
 KF680095.1 Sugarcane yellow leaf virus isolate CBOldJamaica RNA silencing suppressor protein P0 gene, complete cds.
 KF680094.1 Sugarcane yellow leaf virus isolate CBMOL4503 RNA silencing suppressor protein P0 gene, complete cds.
 KF680093.1 Sugarcane yellow leaf virus isolate CBCP961252 RNA silencing suppressor protein P0 gene, complete cds.
 KF680092.1 Sugarcane yellow leaf virus isolate CB57NG56 RNA silencing suppressor protein P0 gene, complete cds.
 KF680091.1 Sugarcane yellow leaf virus isolate CBSi6 RNA silencing suppressor protein P0 gene, complete cds.
 KF680090.1 Sugarcane yellow leaf virus isolate CBPant84211 RNA silencing suppressor protein P0 gene, complete cds.
 KF680089.1 Sugarcane yellow leaf virus isolate CBD1135 RNA silencing suppressor protein P0 gene, complete cds.
 KF680088.1 Sugarcane yellow leaf virus isolate CBB38192 RNA silencing suppressor protein P0 gene, complete cds.
 KF680087.1 Sugarcane yellow leaf virus isolate CBV92102 RNA silencing suppressor protein P0 gene, complete cds.
 KF680086.1 Sugarcane yellow leaf virus isolate CBV09356 RNA silencing suppressor protein P0 gene, complete cds.
 KF680085.1 Sugarcane yellow leaf virus isolate CBTL85441 RNA silencing suppressor protein P0 gene, complete cds.
 KF680084.1 Sugarcane yellow leaf virus isolate CBC85061 RNA silencing suppressor protein P0 gene, complete cds.
 KF680083.1 Sugarcane yellow leaf virus isolate CB86032 RNA silencing suppressor protein P0 gene, complete cds.
 KF680082.1 Sugarcane yellow leaf virus isolate CBC671 RNA silencing suppressor protein P0 gene, complete cds.
 KF680081.1 Sugarcane yellow leaf virus isolate CBBln9605 RNA silencing suppressor protein P0 gene, complete cds.
 KF680080.1 Sugarcane yellow leaf virus isolate CB86010 RNA silencing suppressor protein P0 gene, complete cds.
 KF680079.1 Sugarcane yellow leaf virus isolate CB85019 RNA silencing suppressor protein P0 gene, complete cds.
 KF680078.1 Sugarcane yellow leaf virus isolate CB419 RNA silencing suppressor protein P0 gene, complete cds.
 JX287509.1 Sugarcane yellow leaf virus isolate Perumallapalle coat protein and putative 17 kDa movement protein genes, complete cds.
 JX287508.1 Sugarcane yellow leaf virus isolate Perumallapalle RNA-dependent RNA polymerase (RdRp) gene, partial cds.
 EF635941.1 Sugarcane yellow leaf virus isolate CB86010 aphid transmission factor-like mRNA sequence; and capsid protein and movement protein mRNA, complete cds.
 EF635938.1 Sugarcane yellow leaf virus isolate CB91010 aphid transmission factor-like mRNA sequence; and capsid protein and movement protein mRNA, complete cds.
 EF635931.1 Sugarcane yellow leaf virus isolate CB671 aphid transmission factor-like mRNA sequence; and capsid protein and movement protein mRNA, complete cds.