Tomato leaf curl Karnataka virus

Family   : Geminiviridae
Genus : Begomovirus
Acronym : ToLCKV

Introduction

Tomato leaf curl Karnataka virus (ToLCKV) is a begomovirus that contain DNA-A and the associated satellite beta DNA components. The associated betasatellite shared a high nucleotide identity with Potato apical leaf curl betasatellite (PoLCB]) and Papaya leaf curl betasatellite (PaLCuB) associated with tomato leaf curl disease from India.

Geographical Distribution

Karnataka, Punjab, Maharashtra, Uttar Pradesh, Himachal Pradesh

Particle Morphology

Geminate particles

Transmission Method

Transmitted through whitefly vector, Bemisia tabaci in persistent manner.

Detection

ELISA, PCR and rolling circle amplification

Host Range and Symptomatology

Mentha (Mint)Leaf deformation
SunflowerLeaf curl
Cucumbersevere yellowing and crumpling
Soybeansevere yellowing and crumpling

References

1 Borah, B. K. ; Cheema, G. S. ; Gill, C. K. ; Dasgupta, I., A geminivirus-satellite complex is associated with leaf deformity of mentha (mint) plants in Punjab.. 2010, Indian Journal of Virology, 21, 2, pp 103-109.
2 Chakraborty, S. ; Pandey, P. K. ; Banerjee, M. K. ; Kalloo, G. ; Fauquet, C. M., Tomato leaf curl Gujarat virus, a new Begomovirus species causing a severe leaf curl disease of tomato in Varanasi, India.. 2003, Phytopathology, 93, 12, pp 1485-1495.
3 Chatchawankanphanich, O. ; Maxwell, D. P., Tomato leaf curl Karnataka virus from Bangalore, India, appears to be a recombinant begomovirus.. 2002, Phytopathology, 92, 6, pp 637-645.
4 Govindappa, M. R. ; Shankergoud, I. ; Shankarappa, K. S. ; Wickramaarachchi, W. A. R. T. ; Reddy, B. A. ; Rangaswamy, K. T., Molecular detection and partial characterization of begomovirus associated with leaf curl disease of sunflower (Helianthus annuus) in Southern India.. 2011, Plant Pathology Journal (Faisalabad), 10, 1, pp 29-35.
5 Kumar, Y. ; Hallan, V. ; Zaidi, A. A., Chilli leaf curl Palampur virus is a distinct begomovirus species associated with a betasatellite.. 2011, Plant Pathology, 60, 6, pp 1040-1047.
6 Mehboob-ur-Rahman ; Yuzuf Zafar, Registration of 'NIBGE-2' cotton.. 2007, Journal of Plant Registrations, 1, 2, pp 113-114.
7 Raj, S. K. ; Khan, M. S. ; Snehi, S. K. ; Srivastava, S. ; Singh, H. B., First report of Tomato leaf curl Karnataka virus infecting soybean in India.. 2006, Plant Pathology, 55, 6, pp 817.
8 Sivalingam, P. N. ; Anupam Varma, Non-tomato natural hosts of tomato infecting begomoviruses in north-western India.. 2007, Indian Journal of Virology, 18, 1, pp 20-27.
9 Snehi, S. K. ; Raj, S. K. ; Khan, M. S. ; Prasad, V., Molecular identification of a new begomovirus associated with yellow mosaic disease of Jatropha gossypifolia in India.. 2011, Archives of Virology, 156, 12, pp 2303-2307.
10 Suresh, L. M. ; Malathi, V. G. ; Shivanna, M. B., Molecular detection of begomoviruses associated with a new yellow leaf crumple disease of cucumber in Maharashtra, India.. 2013, Indian Phytopathology, 66, 3, pp 294-301.
11 Vanitha, L. S. ; Shankarappa, K. S. ; Rangaswamy, K. T. ; Wickramaarachchi, W. A. R. T. ; Govindappa, M. R., Complete nucleotide sequence of tomato leaf curl Karnataka virus and ? satellite molecule associated with leaf curl disease on sunflower in India.. 2013, Plant Pathology Journal (Faisalabad), 12, 1, pp 19-25.

Sequences

Complete Sequence
 KX219744.1 Tomato leaf curl Karnataka virus, complete genome.
 KP178731.1 Tomato leaf curl Karnataka virus isolate TC120 segment DNA-A, complete sequence.
 KP178730.1 Tomato leaf curl Karnataka virus isolate TC146 segment DNA-A, complete sequence.
 KP195263.1 Tomato leaf curl Karnataka virus isolate TC253 segment DNA-A, complete sequence.
 KP195261.1 Tomato leaf curl Karnataka virus isolate TC236 segment DNA-A, complete sequence.
 KF663699.1 Tomato leaf curl Karnataka virus isolate TC238 segment DNA-A, complete sequence.
 KF551586.1 Tomato leaf curl Karnataka virus isolate TC281 segment DNA-A, complete sequence.
 KF551585.1 Tomato leaf curl Karnataka virus isolate TC235 segment DNA-A, complete sequence.
 KF551581.1 Tomato leaf curl Karnataka virus isolate TC239 segment DNA-A, complete sequence.
 KF551579.1 Tomato leaf curl Karnataka virus isolate TC255 segment DNA-A, complete sequence.
 KF551578.1 Tomato leaf curl Karnataka virus isolate TC289 segment DNA-A, complete sequence.
 FJ514798.1 Tomato leaf curl Karnataka virus - Bangalore [India:Punjab:Mentha:2007], complete genome.
 JX987088.1 Tomato leaf curl Karnataka virus isolate Lucknow segment DNA-A, complete sequence.
 NC_003897.1 Tomato leaf curl Karnataka virus, complete genome.
 HM803118.1 Tomato leaf curl Karnataka virus clone IKH12 segment DNA-A, complete sequence.
 HM851186.1 Tomato leaf curl Karnataka virus clone IKB3 segment DNA-A, complete sequence.
 AY754812.1 Tomato leaf curl Karnataka virus, complete genome.
 U38239.1 Tomato leaf curl virus - Bangalore II, complete genome.
Partial Sequence
 KM923997.1 Tomato leaf curl Karnataka virus isolate LT coat protein gene, partial cds.
 KC846879.1 Tomato leaf curl Karnataka virus clone 84D coat protein gene, partial cds.
 KC846878.1 Tomato leaf curl Karnataka virus clone 84C coat protein gene, partial cds.
 KC846877.1 Tomato leaf curl Karnataka virus clone 84B coat protein gene, partial cds.
 KC846876.1 Tomato leaf curl Karnataka virus clone 79C coat protein gene, partial cds.
 KC846875.1 Tomato leaf curl Karnataka virus clone 79B coat protein gene, partial cds.
 KC846874.1 Tomato leaf curl Karnataka virus clone 79A coat protein gene, partial cds.
 KC846873.1 Tomato leaf curl Karnataka virus clone 62C coat protein gene, partial cds.
 KC846872.1 Tomato leaf curl Karnataka virus clone 62B coat protein gene, partial cds.
 KC846871.1 Tomato leaf curl Karnataka virus clone 62A coat protein gene, partial cds.
 KC846870.1 Tomato leaf curl Karnataka virus clone 55C coat protein gene, partial cds.
 KC846869.1 Tomato leaf curl Karnataka virus clone 55B coat protein gene, partial cds.
 KC846868.1 Tomato leaf curl Karnataka virus clone 55A coat protein gene, partial cds.
 KC846867.1 Tomato leaf curl Karnataka virus clone 46C coat protein gene, partial cds.
 KC846866.1 Tomato leaf curl Karnataka virus clone 46B coat protein gene, partial cds.
 KC846865.1 Tomato leaf curl Karnataka virus clone 46A coat protein gene, partial cds.
 HM134235.1 Tomato leaf curl Karnataka virus-B1 [India:Haryana:Papaya:2009] coat protein gene, complete cds.
 FN645928.1 Tomato leaf curl Karnataka virus partial AV1 gene for coat protein, clone Cgc-PCR A1.
 FN645924.1 Tomato leaf curl Karnataka virus partial AV1 gene for coat protein, clone 6-PCR A1.
 JQ178365.1 Tomato leaf curl Karnataka virus-[Jatropha curcas] coat protein (AV1) gene, partial cds; replication enhancer protein (AC3) and transcriptional activator protein (AC2) genes, complete cds; and replication-associated protein (AC1) gene, partial cds.
 JN887129.1 Tomato leaf curl Karnataka virus isolate TDHT_TREP replication initiation protein gene, partial cds.
 FJ436982.1 Tomato leaf curl Karnataka virus isolate Bahraich coat protein (AV1) gene, complete cds.
 EU604297.2 Tomato leaf curl Karnataka virus isolate Lucknow coat protein (AV1) gene, complete cds.
 AY738101.1 Tomato leaf curl Karnataka virus from India coat protein (AV1) gene, partial cds; replication associated protein (AC3) and transactivator protein (AC2) genes, complete cds; and replicase (AC1) gene, partial cds.
 AY738100.1 Tomato leaf curl Karnataka virus from India coat protein (AV1) gene, partial cds; replication associated protein (AC3) and transactivator protein (AC2) genes, complete cds; and replicase (AC1) gene, partial cds.
 AY375241.3 Tomato leaf curl Karnataka virus-[tomato:Lucknow] precoat protein (AV2) and coat protein (AV1) genes, complete cds.
 AY753203.1 Tomato leaf curl Karnataka virus coat protein (AV1) gene, complete cds.