Apple stem grooving virus

Family   : Betaflexiviridae
Genus : Capillovirus
Acronym : ASGV

Introduction

Apple stem grooving virus is a plant pathogenic virus of the family Flexiviridae. Probably occurs world-wide in Rosaceae fruit trees and citrus in which it is usually symptomless. Its natural mode of spread is unknown. Virginia Crab stem grooving virus, Chenopodium dark green epinasty virus, Brown line disease virus are few Synonyms commonly used. Apple latent virus Type 2 isolate C-431 is a strain of apple stem grooving virus.

Major Diseases

Stem grooving disease

Geographical Distribution

Regions of Himachal Pradesh (HP) and Jammu & Kashmir (J&K).

Particle Morphology

A virus with flexuous filamentous particles 620-650 long and 12nm in diameter

Transmission Method

Transmitted by means not involving a vector; Virus transmitted by mechanical inoculation; transmitted by grafting.no seed transmission.

Detection

Double antibody sandwich ELISA (DAS-ELISA) is used for detection of virus.

Host Range and Symptomatology

apple, nectarines, plum, cherry, quince and apricotSymptoms on susceptible apple species consist of severe pitting and grooving of xylem with pegs protruding on the inner bark face and overall decline in plant growth.

References

1 Anuradha Negi ; Tanuja Rana ; Yogesh Kumar ; Raja Ram ; Vipin Hallan ; Zaidi, A. A., Analysis of the coat protein gene of Indian strain of Apple stem grooving virus.. 2010, Journal of Plant Biochemistry and Biotechnology, 19, 1, pp 91-94.
2 Brakta, A. ; Thakur, P. D. ; Handa, A., First report of apple top working disease caused by viruses (Apple stem grooving virus, Apple chlorotic leaf spot virus, and Apple stem pitting virus) in apple in India.. 2013, Plant Disease, 97, 7, pp 1001-1002.
3 Pooja Bhardwaj ; Raja Ram ; Zaidi, A. A. ; Vipin Hallan, Natural occurrence of Apple stem grooving virus on Bauhinia variegata.. 2015, Trees: Structure and Function, 29, 5, pp 1415-1422.
4 Pooja Bhardwaj ; Raja Ram ; Zaidi, A. A. ; Vipin Hallan, Characterization of Apple stem grooving virus infecting Actinidia deliciosa (Kiwi) in India.. 2014, Scientia Horticulturae, 176, 5, pp 105-111.
5 Surender Kumar ; Singh, R. M. ; Raja Ram ; Badyal, J. ; Vipin Hallan ; Zaidi, A. A. ; Anupam Varma, Determination of major viral and sub viral pathogens incidence in apple orchards in Himachal Pradesh.. 2012, Indian Journal of Virology, 23, 1, pp 75-79.
6 Tanuja Rana ; Anuradha Negi ; Sunny Dhir ; Tombisana Thockchom ; Vanita Chandel ; Yashika Walia ; Singh, R. M. ; Raja Ram ; Vipin Hallan ; Zaidi, A. A., Molecular diagnosis of apple virus and viroid pathogens from India.. 2011, Archives of Phytopathology and Plant Protection, 44, 6, pp 505-512.

Sequences

Complete Sequence
 LT160740.1 Apple stem grooving virus complete genome, isolate HPKu-2.
 HE978837.1 Apple stem grooving virus clone ASGVp12 complete genome.
Partial Sequence
 KR815877.1 Apple stem grooving virus isolate Uttrakhand coat protein gene, complete cds.
 KJ617057.1 Apple stem grooving virus isolate Red Delicious coat protein gene, complete cds.
 KJ617056.1 Apple stem grooving virus isolate Red Chief coat protein gene, complete cds.
 KC110892.1 Apple stem grooving virus isolate Kotkhai nonfunctional coat protein gene, partial sequence.
 KC110891.1 Apple stem grooving virus isolate Nauni nonfunctional coat protein gene, partial sequence.
 FN393044.2 Apple stem grooving virus CP gene for coat protein, genomic RNA, isolated from pear in India.
 FJ952165.1 Apple stem grooving virus isolate A8ASG coat protein gene, partial cds.
 FJ952164.1 Apple stem grooving virus isolate A7ASG coat protein gene, partial cds.
 FJ952160.1 Apple stem grooving virus isolate A6ASG coat protein gene, partial cds.
 FJ952159.1 Apple stem grooving virus isolate A5ASG coat protein gene, partial cds.
 FN599521.1 Apple stem grooving virus cp gene for coat protein, isolate Palampur.
 FM204881.1 Apple stem grooving virus CP gene for coat protein, genomic RNA.
 LN823995.1 Apple stem grooving virus CP gene for Coat protein, isolate HPCJ16.
 LN823994.1 Apple stem grooving virus CP gene for Coat protein, isolate HPCJ13.
 LN823993.1 Apple stem grooving virus CP gene for Coat protein, isolate HPCJ1.
 LN901420.1 Apple stem grooving virus CP gene for coat protein, isolate HPB-4.
 LN901416.1 Apple stem grooving virus CP gene for coat protein, isolate HPBR-5.
 LN823992.1 Apple stem grooving virus CP gene for Coat protein, isolate HPPR-46.
 LN823991.1 Apple stem grooving virus CP gene for Coat protein, isolate HPPR-3.
 LN823990.1 Apple stem grooving virus CP gene for Coat protein, isolate HPPR-2.
 LN823989.1 Apple stem grooving virus CP gene for Coat protein, isolate RuEl-17.
 LN823988.1 Apple stem grooving virus CP gene for Coat protein, isolate RuEl-16.
 LN823987.1 Apple stem grooving virus CP gene for Coat protein, isolate RuEl-7.
 LN823986.1 Apple stem grooving virus CP gene for Coat protein, isolate RuEl-3.
 LN849920.1 Apple stem grooving virus partial gene for polyprotein, replicase region, isolate Fi-16.
 LN849919.1 Apple stem grooving virus partial gene for polyprotein, replicase region, isolate Fi-29.
 LN849918.1 Apple stem grooving virus partial gene for polyprotein, replicase region, isolate Fi-20.
 LN849917.1 Apple stem grooving virus partial gene for polyprotein, replicase region, isolate Fi-19.
 LN849916.1 Apple stem grooving virus partial gene for polyprotein, replicase region, isolate Fi-15.
 LN559087.1 Apple stem grooving virus CP gene for Coat protein, segment CP, isolate WR-32.
 LN559086.1 Apple stem grooving virus CP gene for Coat protein, segment CP, isolate WR-1.
 LN559085.1 Apple stem grooving virus CP gene for Coat protein, segment CP, isolate HWC-47.
 LN559084.1 Apple stem grooving virus CP gene for Coat protein, segment CP, isolate HWC-16.
 LN559083.1 Apple stem grooving virus CP gene for Coat protein, segment CP, isolate HWC-15.
 LN559082.1 Apple stem grooving virus CP gene for Coat protein, segment CP, isolate Fi-29.
 LN559081.1 Apple stem grooving virus CP gene for Coat protein, segment CP, isolate Fi-20.
 LN559080.1 Apple stem grooving virus CP gene for Coat protein, segment CP, isolate Fi-19.
 LN559079.1 Apple stem grooving virus CP gene for Coat protein, segment CP, isolate Fi-16.
 LN559078.1 Apple stem grooving virus CP gene for Coat protein, segment CP, isolate Fi-15.
 LN559077.1 Apple stem grooving virus CP gene for Coat protein, segment CP, isolate BAU18.
 LN559076.1 Apple stem grooving virus CP gene for Coat protein, segment CP, isolate BAU16.
 LN559075.1 Apple stem grooving virus CP gene for Coat protein, segment CP, isolate BAU2.
 LN559074.1 Apple stem grooving virus CP gene for Coat protein, segment CP, isolate BAU1.
 LN901436.1 Apple stem grooving virus CP gene for coat protein, isolate HPHF15.
 LN901435.1 Apple stem grooving virus CP gene for coat protein, isolate HPHF14.
 LN901434.1 Apple stem grooving virus CP gene for coat protein, isolate HPHF17.
 LN901433.1 Apple stem grooving virus CP gene for coat protein, isolate HPHF13.
 LN901432.1 Apple stem grooving virus CP gene for coat protein, isolate HPHF16.
 LN901431.1 Apple stem grooving virus CP gene for coat protein, isolate HPDF11.
 LN901430.1 Apple stem grooving virus CP gene for coat protein, isolate HPDF2.
 LN901429.1 Apple stem grooving virus CP gene for coat protein, isolate HPDF9.
 LN901428.1 Apple stem grooving virus CP gene for coat protein, isolate HPDF10.
 LN901427.1 Apple stem grooving virus CP gene for coat protein, isolate HPDF7.
 LN901415.1 Apple stem grooving virus CP gene for coat protein, isolate HPHC-1.
 LN901424.1 Apple stem grooving virus CP gene for coat protein, isolate HPJ-2.
 LN901425.1 Apple stem grooving virus CP gene for coat protein, isolate HPKp-12.
 LN901423.1 Apple stem grooving virus CP gene for coat protein, isolate HPKp-15.
 LN901426.1 Apple stem grooving virus CP gene for coat protein, isolate HPKS-1.
 LN901421.1 Apple stem grooving virus CP gene for coat protein, isolate HPNK-4.
 LN901439.1 Apple stem grooving virus CP gene for coat protein, isolate Ap-RD1.
 LN901438.1 Apple stem grooving virus CP gene for coat protein, isolate Ap-T2.
 LN901437.1 Apple stem grooving virus CP gene for coat protein, isolate Ap-GS2.
 LN907283.1 Apple stem grooving virus partial Replicase gene for replicase, isolate Ap-SK.
 LN907282.1 Apple stem grooving virus partial Replicase gene for replicase, isolate Ap-RF.
 LN907281.1 Apple stem grooving virus partial Replicase gene for replicase, isolate Ap-T2.
 LN907280.1 Apple stem grooving virus partial Replicase gene for replicase, isolate Ap-RC.
 LN626999.2 Apple stem grooving virus gene for partial polyprotein, replicase region, isolate Bam 14.
 LN626998.2 Apple stem grooving virus gene for partial polyprotein, replicase region, isolate Bam 28.
 LN626997.2 Apple stem grooving virus gene for partial polyprotein, replicase region, isolate Bam 44.
 LM651239.2 Apple stem grooving virus CP gene for coat protein, isolate Bam 14.
 LN627005.1 Apple stem grooving virus CP gene for Coat protein, segment Coat protein, isolate Ap-VD.
 LN627004.1 Apple stem grooving virus CP gene for Coat protein, segment Coat protein, isolate Ap-RF.
 LN627003.1 Apple stem grooving virus CP gene for Coat protein, segment Coat protein, isolate Ap-RC.
 LN627002.1 Apple stem grooving virus CP gene for Coat protein, segment Coat protein, isolate Ap-SK.
 LN627001.1 Apple stem grooving virus partial replicase gene for Replicase, isolate Bam 29.
 LN627000.1 Apple stem grooving virus partial replicase gene for Replicase, isolate Bam 7.
 LN626996.1 Apple stem grooving virus partial replicase gene for Replicase, isolate Bam 42.
 LN626995.1 Apple stem grooving virus partial replicase gene for Replicase, isolate Bam 39.
 LM651244.1 Apple stem grooving virus CP gene for coat protein, isolate Bam 29.
 LM651243.1 Apple stem grooving virus CP gene for coat protein, isolate Bam 28.
 LM651242.1 Apple stem grooving virus CP gene for coat protein, isolate Bam 7.
 LM651241.1 Apple stem grooving virus CP gene for coat protein, isolate Bam 42.
 LM651240.1 Apple stem grooving virus CP gene for coat protein, isolate Bam 39.
 LM651238.1 Apple stem grooving virus CP gene for coat protein, isolate Bam 44.
 HG796198.1 Apple stem grooving virus CP gene for coat protein, isolate Ki-3.
 HG796197.1 Apple stem grooving virus CP gene for coat protein, isolate Ki-2.
 HG796196.1 Apple stem grooving virus CP gene for coat protein, isolate Ki-1.
 LN901417.1 Apple stem grooving virus CP gene for coat protein, isolate HPR-3.
 LN901422.1 Apple stem grooving virus CP gene for coat protein, isolate HPSN-2.
 LN901414.1 Apple stem grooving virus CP gene for coat protein, isolate HPSl-5.
 LN901418.1 Apple stem grooving virus CP gene for coat protein, isolate HPS-3.
 LN901419.1 Apple stem grooving virus CP gene for coat protein, isolate HPTh-5.
 LN901413.1 Apple stem grooving virus CP gene for coat protein, isolate JKSH-2.
 FR750245.1 Apple stem grooving virus partial RdRp gene for RNA replicase, isolate Hatkoti, genomic RNA.
 FR750317.1 Apple stem grooving virus mp gene for movement protein, strain ASGV.
 FR832877.1 Apple stem grooving virus partial MP gene for polyprotein, MP region, genomic RNA.
 FN565167.1 Apple stem grooving virus partial rep gene for replicase, isolate Palampur, genomic RNA.
 FR692120.1 Apple stem grooving virus proviral partial gene for polyprotein, RNA dependent RNA polymerase region, clone RdRp.
 FR692119.1 Apple stem grooving virus proviral partial gene for polyprotein, coat protein region, clone CP.
 FR692118.1 Apple stem grooving virus proviral partial gene for polyprotein, replicase region, clone Rep.