Contig Alignment

Base A B C D E F G H I J K L
1 G . . . G . . . . . . .
2 T . . . T . . . . . . .
3 T . . . T . . . . . . .
4 T . . . T . . . . . . .
5 C . . . C . . . . . . .
6 T . . . T . . . . . . .
7 T . . . T T . . . . . .
8 A . . . A A . . . . . .
9 C C C C C C . . C C . .
10 C C C C C C . C C C . .
11 A A A A A A . A A A . .
12 T T T T T T . T T T . .
13 C C C C C C . C C C . .
14 C C C C C C . C C C . .
15 A A A A A A . A A A . .
16 C C C C C C . C C C . .
17 C C C C C C . C C C . .
18 T T T T T T . T T T . .
19 G G G G G G . G G G . .
20 C C C C C C . C C C . .
21 A A A A A A A A A A . .
22 G G G G G G G G G G . .
23 C C C C C A C C C C . .
24 T T T T T T T T T T . .
25 G G G G G G G G G G . .
26 C C C C C C C C C C . .
27 A A A A A A A A A A . .
28 C C C C C C C C C C C .
29 A A A A A A A A A A A .
30 G G G G G G G G G G G .
31 A A A A A A A A A A A .
32 G G G G G G G G G G G .
33 C G C C C C C C C C C .
34 T T T T T T T T T T T .
35 A A A A A A A A A A A .
36 A A A A A A A A A A A .
37 G G G G G G G G G G G .
38 C C C C C C C C C C C .
39 G G G G G G G G G G G .
40 A A A A A A A A A A A .
41 G G G G G G G G G G G .
42 A A A A A A A A A A A A
43 T G T T T T T T T T T T
44 G G G G G G G G G G G G
45 G G G G G G G G G G G G
46 C C C C C C C C C C C C
47 A A A A A A A A A A A A
48 T T T T T T T T T T T T
49 C C C C C C C C C C C C
50 C C C C C C C C C C C C
51 C C C C C C C C C C C C
52 T T T T T T T T T T T T
53 G G G G G G G G G G G G
54 A A A A A A A A A A A A
55 G G G G G G G G G G G G
56 C C C C C C C C C C C C
57 A A A A A A A A A A A A
58 T C T T T T T T T T T T
59 G G G G G G G G G G G G
60 G G G G G G G G G G G G
61 C C C C C C C C C C C C
62 G G G G G G T G G G G G
63 T T T T T T T T T T T T
64 T T T T T T T T T T T T
65 G G G G G G G G G G G G
66 G C G G G G G G G G G G
67 C C C C C C C C C C C C
68 C C C C C C C C C C C C
69 G G G G G G G G G G G G
70 G G G G G G G G G G G G
71 A A A A A A A A A A A A
72 T T T T T T T T T T T T
73 C C C C C C C C C C C C
74 A A A A A A A A A A A A
75 G G G G G G G G G G G G
76 C C C C C C C C C C C C
77 C T C C C C C C C C C C
78 G G G G G G G G G G G G
79 G G G G G G G G G G G G
80 C C C C C C C C C C C C
81 G G G G G G G G G G G G
82 C C C C C C C C C C C C
83 G G G G G G G G G G G G
84 A A A A A A A A A A A A
85 G G G G G G G G G G G G
86 A A A A A A A A A A A A
87 A A A A A A A A A A A A
88 T T T T T T T T T T T T
89 G G T G G G G G G G G G
90 T T T T T T T T T T T T
91 T T T T T T T T T T T T
92 C C C C C C C C C C C C
93 G G G G G G G G G G G G
94 C T C C C C C C C C C C
95 T T T T T T T T T T T T
96 G G G G G G G G G G G G
97 C T C C C A C C C C C C
98 G G G G G G G G G G G G
99 A A A A A A A A A A A A
100 C C C C C C C C C C C C
101 G G G G G G T G G G G G
102 G G G G G G G G G G G G
103 C C C C C C C C C C C C
104 G G G G G G G G G G G G
105 G G G G G G G G G G G G
106 C C C C C C C C C C C C
107 A A A A A A A A A A A A
108 G T G G G G G G G G G G
109 C C C C C C C C C C C C
110 C C C C C C C C C C C C
111 A A A A A A A A A A A A
112 A A A A A A A A A A A A
113 A A A A A A A A A A A A
114 G G G G G G G G G G G G
115 G G G G G G G G G G G G
116 A A A A A A A A A A A A
117 G G G G G G G G G G G G
118 C C C C C C C C C C C C
119 T T T T T T T T T T T T
120 G G G G G G G G G G G G
121 G G G G G G G G G G G G
122 G G G G G G G G G G G G
123 A A A A A A A A A A A A
124 G G G G G G G G G G G G
125 C C C C C C C C C C C C
126 G G G G G G G G G G G G
127 G G G G G G G G G G G G
128 C G C C C C C C C C C C
129 G G G G G G G G G G G G
130 G G G G G G G G G G G G
131 C C C C C C C C C C C C
132 G G G G G G G G G G G G
133 C C C C C C C C C C C C
134 C C C C C C C C C C C C
135 G G G G G G G G G G G G
136 G G G G G G G G G G G G
137 G G G G G G G G G G G G
138 G G G G G G G T G G G G
139 G G G G G G G G G G G G
140 G G G G G G G G G G G G
141 G G G G G G G G G G G G
142 A A A A A A A A A A A A
143 G G G G G G G G G G G G
144 A A A A A A A A A A A A
145 A A A A A A A A A A A A
146 A A A A A A A A A A A A
147 G G G G G G G G G G G G
148 G G G G G G G G G G G G
149 G T G G G G G G G G G G
150 C C C C C C C C C C C C
151 T T T T T T T T T T T T
152 G C G G G G G G G G G G
153 T T T T T T T T T T T T
154 T T T T T T T T T T T T
155 T T T T T T T T T T T T
156 G G G G G G G G G G G G
157 A A C A A A A A A A A A
158 C C C C C C C C C C C C
159 T T T T T T T T T T T T
160 G G G G G G G G G G G G
161 G G G G G G G G G G G G
162 A A A A A A A A A A A A
163 T T T T T T T T T T T T
164 T T T T T T T T T T T T
165 C A C C C C C C C C C C
166 T T T T T T T T T T T T
167 G G G G G G G G G G G G
168 G G G G G G G G G G G G
169 G G G G G G G G G G G G
170 A A A A A A A A A A A A
171 G G G G G G G G G G G G
172 G G G G G G G G G G G G
173 C C C C C C C C C C C G
174 C C C C C C C C C C C C
175 T T T T T T T T T T T T
176 A A A A A A A A A A A A
177 C C C C C C C C C C C C
178 A A A A A A A A A A A A
179 G G G G G G G G G G G G
180 A A A A A A A A A A A A
181 A A A A A A A A A A A A
182 G G G G G G G G G G G G
183 G G G G G G G G G G G G
184 A A A A A A A A A A A A
185 G G G G G G G G G G G G
186 G G G G G G G G G G G G
187 A A A A A A A A A A A A
188 C C C C C C C C C C C C
189 C C C C C C C C C C C C
190 A A A A A A A A A A A A
191 G G G G G G G G G G G G
192 C T C C C C C C C C C C
193 T T T T T T T T T T T T
194 G G G G G G G G G G G G
195 G G G G G G G G G G G G
196 T T T T T T T T T T T T
197 G G G G G G G G G G G G
198 G G G G G G G G G G G G
199 A A A A A A A A A A A A
200 G G G G G G G G G G G G
201 A A A A A A A A A A A A
202 C C C C C C C C C C C C
203 T T T T T T T T T T T T
204 G G G G G G G G G G G G
205 A G A A A A A A A A A A
206 C C C C C C C C C C C C
207 C C C C C C C C C C C C
208 C C C C C C C C C C C C
209 C C C C C C C C C C C C
210 A A A A A A A A A A A A
211 T T T T T T T T T T T T
212 C C C C C C C C C C C C
213 C C C C C C C C C C C C
214 T T T T T T T T T T T T
215 C C C C C C C C C C C C
216 A A A A A A A A A A A A
217 A A A A A A A A A A A A
218 G G G G G G G G G G G G
219 A A A A A A A A A A A A
220 A A A A A A A A A A A A
221 G G G G G T G G G G G G
222 G G G G G G G G G G G G
223 T T T T T T T T T T T T
224 C C C C C T C C C C C C
225 G G G G G G G G G G G G
226 C C C C C C C C C C C C
227 G G G G G G G G G G G G
228 G G G G G G G G G G G G
229 A A A A A A A A A A A A
230 G G G G G G G G G C G G
231 A A A A A A A A A A A A
232 A A A A A A A A A A A A
233 G G G G G G G G G G G G
234 G G G G G G G G G G G G
235 C C C C C C C C C C C C
236 A A A A A A A A A A A A
237 A A A A A A A A A A A A
238 C C C C C C C C C C C C
239 C C C C C C C C C C C C
240 T T T T T T T T T T T T
241 C C C C C C C C C C C C
242 C C C C C C C C C C C C
243 A A A A A A A A A A A A
244 C C C C C C C C C C C C
245 C C C C C C C C C C C C
246 A A A A A A A A A A A A
247 C C C C C C C C C C C C
248 C C C C C C C C C C C C
249 G G G G G G G G G G G G
250 C C C C C C C C C C C C
251 C C C C C C C C C C C C
252 A A A A A A A A A A A A
253 C C C C C C C C C C C C
254 C C C C C A C C C C C C
255 G G G G G G G G G G G G
256 G G C G G G G G G G G G
257 C C C C C C C C C C C C
258 T T T T T T T T T T T T
259 C C C C C C C C C C C C
260 C C C C C C C C C C C C
261 A A A A A A A A A A A A
262 G G G G G G G G G G G G
263 G G G G G G G G G G G G
264 A A A A A A A A A A A A
265 A A A A A A A A A A A A
266 A C A A A A A A A A A A
267 T T T T T T T T T T T T
268 C C C C C C C C C C C C
269 C C C C C C C C C C C C
270 T T T T T T T T T T T T
271 C C C C C C C C C C C C
272 C C C C C C C C C C C C
273 G G G G G G G G G G G G
274 G G G G G G G G G G G G
275 C C C C C C C C C C C C
276 A A A A A A A A A A A A
277 C C C C C C C C C C C C
278 C C C C C C C C C C C C
279 A A A A A A A A A A A A
280 C C C C C C C C C C C C
281 C C C C C G C C C C C C
282 T T T T T T T T T T T T
283 C C C C C C C C C C C C
284 C C G C C G C C C C C C
285 G G G G G G G G G G G G
286 T T T T T T T T T T T T
287 C C C C C C C C C C C C
288 G G G G G G G G G G G G
289 C C C C C C C C C C C C
290 C C C C C C C C C C C C
291 G G G G G G G G G G G G
292 T T T T T T T T T T T T
293 C C C C C C C C C C C C
294 C C C C C C C C C C C C
295 C C C C C C C C C C C C
296 C C C C C C C C C C C C
297 A A A A A A A A A A A A
298 A A A A A A A A A A A A
299 G G G G G G G G G G G G
300 A A A A A A A A A A A A
301 A A A A A A A A A A A A
302 G G G G G G G G G G G G
303 A A A A A A A A A A A A
304 A A A A A A A A A A A A
305 G G G G G G G G G G G G
306 T T T T T T T T T T T T
307 T T T T T T T T T T T T
308 C C C C C C C C C C C C
309 G G G G G G G G G G G G
310 G G G G G G G G G G G G
311 C C C C C C C C C C C C
312 G G G G G G G G G G G G
313 G G G G G G G G G G G G
314 C C C C C C C C C C C C
315 T T T T T T T T T T T T
316 T T T T T T T T T T T T
317 C C C C C C C C C C C C
318 G G G G G G G C G T G G
319 G G G G G G G G G G G G
320 A A A A A A A A A A A A
321 G G G G G G G C G G G G
322 G G G G G G G G G G G G
323 T T T T T T T T T T T T
324 C C C C C C C C C C C C
325 T T T T T T T T T T T T
326 G G G G G G G G G G G G
327 T T T T T T T T T T T T
328 T T T T T T T T T T T T
329 C C C C C C C C C C C C
330 G G G G G G G G G G G G
331 C C C C C C C C C C C C
332 T T T T T T T T T T T T
333 A A A A A A A A A A A A
334 A A A A A A A A A A A A
335 G G G G G G G G G T G G
336 A A A A A A A A A A A A
337 A A A A A A A A A A A A
338 C T C C C C C C C C C C
339 T T T T T T T T T T T T
340 G G G G G G G G G G G G
341 A A A A A A A A A A A A
342 T T T T T T T T T T T T
343 G G G G G G G G G G G G
344 A A A A A A A A A A A A
345 T T T T T T T T T T T T
346 C T C C C C C C C C C C
347 T T T T T T T T T T T T
348 A A A A A A A A A A A A
349 T T T T T T T T T T T T
350 T T T T T T T T T T T T
351 A A A A A A A A A A A A
352 A A A A A A A A A A A A
353 T T T T T T T T T T T T
354 T T T T T T T T T T T T
355 T T T T T T T T T T T T
356 C C C C C C C C C C C C
357 C C C C C C C C C C C C
358 T T T T T T T T T T T T
359 C C C C C C C C C C C C
360 C C C C C C C C C C C C
361 C C C C C C C C C C C C
362 A A A A A A A A A A A A
363 T T T T T T T T T T T T
364 T T T T T T T T T T T T
365 T G T T T T T T T T T T
366 G G G G G G G G G G G G
367 C C C C C C C C C C C C
368 A A A A A A A A A A A A
369 A A A A A A A A A A A A
370 G G G G G G G G G G G G
371 T T T T T T T T T T T T
372 C C C C C A C C C C C C
373 T T T T T T T T T T T T
374 A A A A A A A A A A A A
375 T T T T T T T T T T T T
376 A A A A A A A A A A A A
377 T T T T T T T T T T T T
378 T T T T T T T T T T T T
379 G G G G G G G G G G G G
380 T T T T T T T T T T T T
381 C C C C C C C C C C C C
382 C C C C C C C C C C C C
383 C C C C C C C C C C C C
384 T T T T T T T T T T T T
385 C C C C C C C C C C C C
386 T T T T T T T T T T T T
387 C C C C C C C C C C C C
388 T T T T T T T T T T T T
389 G G G G G G G G G G G G
390 G G G G G G G G G G G G
391 C C C C C C C C C C C C
392 G G G G G G G G G G G G
393 C C C C C C C C C C C C
394 T T T T T T T T T T T T
395 G G G G G G G G G G G G
396 T T T T T T T T T T T T
397 T T T T T T T T T T T T
398 G G G G G G G G G G G G
399 C C C C C C C C C C C C
400 T T T T T T T T T T T T
401 G G G G G G G G G G G G
402 C C C C C C C C C C C C
403 G G G G G G G G G G G G
404 G G G G G G G G G G G G
405 G G G G G G G G G G G G
406 G G G G G G G G G G G G
407 G G G G G G G G G G G G
408 A A A A A A A A A A A A
409 G G G G G G G G G G G G
410 C C C C C C C C C C C C
411 T T T T T T T T T T T T
412 T T T T T T T T T T T T
413 C C C C C C C C C C C C
414 T T T T T T T T T T T T
415 G G G G G G G G G G G G
416 C C C C C C C C C C C C
417 T T T T T T T T T T T T
418 A A A A A A A A A A A A
419 C C C C C C C C C C C C
420 T T T T T T T T T T T T
421 G G G G G G G G G G G G
422 C C C C C C C C C C C C
423 A A A A A A A A A A A A
424 T T T T T T T T T T T T
425 T T T T T T T T T T T T
426 C C C C C C C C C C C C
427 T T T T T T T T T T T T
428 C C C C C C C C C C C C
429 T T T T T T T T T T T T
430 T T T T T T T T T T T T
431 C C C C C C C C C C C C
432 C C C C C C C C C C C C
433 T T T T T T T T T T T T
434 C C C C C C C C C C C C
435 C C C C C C C C C C C C
436 T T T T T T T T T T T T
437 G G G G G G G G G G G G
438 C C C C C C C C C C C C
439 T T T T T T T T T T T T
440 C C C C C C C C C C C C
441 C C C C C C C C C C C C
442 T T T T T T T T T T T T
443 T . T T T T T T T T T T
444 C . C C C C C C C C C C
445 T . T T T T T T T T T T
446 A . A A A A A A A A A A
447 - . - - - G - - - - - -
448 T . T T T T T T T T T T
449 A . A A A A A A A A A A
450 T . T T T T T T T T T T
451 T . T T T T T T T T T T
452 A . A A A A A A A A A A
453 T . T T T T T T T T T T
454 G . G G G G G G G G G G
455 T . T T T T T T T T T T
456 T . T T T T T T T T T T
457 A . A A A A A A A A A A
458 C . C C C G C C C C C C
459 T . T T T C T T T T T T
460 T . T T T T T T T T T T
461 G . G G G G G G G G G G
462 T . T T T T T T T T T T
463 G . G G G G G G G G G G
464 A . A A A A A A A A A A
465 T . T . T T T T T T T T
466 T . T . T T T T T T T T
467 C . C . C C C C C C C C
468 C . C . C C C C C C C C
469 A . A . A A A A A A A A
470 A . A . A A A A A A A A
471 - . - . - - - A - - - -
472 C . C . C C C C C C C C
473 T . T . T T T T T T T T
474 C . C . C A C C C C C C
475 G . G . G G G G G G G G
476 A . A . A A A A A A A A
477 - . - . - - - - G - - -
478 A . A . A A A A A A A A
479 A . G . A A A C A A A A
480 A . . . A A A A A A A A
481 . . . . G G G G G G G G
482 . . . . G G G G G G G G
483 . . . . T T T T T T T T
484 . . . . T T T T T T T T
485 . . . . A A A A A A A A
486 . . . . A A A A A A A A
487 . . . . T A T T T T T T
488 . . . . T . C T T T T T
489 . . . . A . . A A A A A
490 . . . . T . . T T T T T
491 . . . . C . . C C C C C
492 . . . . A . . A A A A A
493 . . . . T . . T T T T T
494 . . . . A . . A A A A A
495 . . . . T . . T A T T T
496 . . . . A . . A . A A A
497 . . . . T . . T . T T T
498 . . . . T . . T . T T T
499 . . . . T . . T . T T T
500 . . . . T . . T . T T T
501 . . . . T . . T . T T T
502 . . . . A . . . . A A A
503 . . . . A . . . . A A A
504 . . . . T . . . . A T T
505 . . . . . . . . . . . C
506 . . . . . . . . . . . G
507 . . . . . . . . . . . C
508 . . . . . . . . . . . G
509 . . . . . . . . . . . T
510 . . . . . . . . . . . C
511 . . . . . . . . . . . T
512 . . . . . . . . . . . T
513 . . . . . . . . . . . A
514 . . . . . . . . . . . A
515 . . . . . . . . . . . T
516 . . . . . . . . . . . T
517 . . . . . . . . . . . G
518 . . . . . . . . . . . C
519 . . . . . . . . . . . C
520 . . . . . . . . . . . C
521 . . . . . . . . . . . T
522 . . . . . . . . . . . A
523 . . . . . . . . . . . A
524 . . . . . . . . . . . A
525 . . . . . . . . . . . T
526 . . . . . . . . . . . T
527 . . . . . . . . . . . A
528 . . . . . . . . . . . A
529 . . . . . . . . . . . T
530 . . . . . . . . . . . T
531 . . . . . . . . . . . T
532 . . . . . . . . . . . A
533 . . . . . . . . . . . T
534 . . . . . . . . . . . C