Base	A B C D E F 
1	. T . . . .  
2	. T . . . .  
3	. T . . . .  
4	. T . . . .  
5	. T . . . .  
6	. T . . . .  
7	. T . . . .  
8	. A . . . .  
9	. A . . . .  
10	. A . . . .  
11	. C . . . .  
12	. A . . . .  
13	. A A A A A  
14	. A A A A A  
15	. T T T T T  
16	. C C C C C  
17	. T T T T T  
18	. A A A A A  
19	. T T T T T  
20	. G G G G G  
21	. A A A A A  
22	. T T T T T  
23	. T T T T T  
24	. C C C C C  
25	. G G G G G  
26	. T T T T T  
27	. T T T T T  
28	. G G G G G  
29	. C C C C C  
30	. T T T T T  
31	. G G G G G  
32	. C C C C C  
33	. A A A A A  
34	. A A A A A  
35	. G G G G G  
36	. A A A A A  
37	. G G G G G  
38	. A A A A A  
39	. A A A A A  
40	. G G G G C  
41	. A A A A A  
42	. A A A A A  
43	. A A A A T  
44	. C C C C C  
45	. A A A A A  
46	. C C C C C  
47	. A A A A A  
48	. A A A A A  
49	. T T T T T  
50	. T T T T T  
51	. A A A A A  
52	. C C C C C  
53	. T T T T T  
54	. T T T T T  
55	. C C C C C  
56	. G G G G G  
57	. T T T T T  
58	. T T T T T  
59	. C C C C C  
60	. A A A A A  
61	. T T T T T  
62	. A A A A A  
63	. C C C C C  
64	. A A A A A  
65	. G G G G G  
66	. C C C C C  
67	. T T T T T  
68	. T T T T T  
69	. G G G G G  
70	. A A A A A  
71	. A A A A A  
72	. G G G G G  
73	. C C C C C  
74	. G G G G G  
75	. T T T T T  
76	. A A A A A  
77	. A A A A A  
78	. T T T T T  
79	. T T T T T  
80	. T T T T T  
81	. T T T T T  
82	. A A A A A  
83	. G G G G G  
84	. G G G G G  
85	. A A A A A  
86	. T T T T T  
87	. G G A A A  2	 transition
88	. C C C C C  
89	. G G G G G  
90	. A A A A A  
91	. G G G G G  
92	. A A A A A  
93	. A A A A A  
94	. T T T T T  
95	. C C C C C  
96	. G G G G G  
97	. C C C C C  
98	. T T T T T  
99	. C C C C C  
100	. A A A A A  
101	. G G G G G  
102	. A A A A A  
103	. T T T T T  
104	. T T T T T  
105	. A A A A A  
106	. A A A A A  
107	. G G G G G  
108	. G G G G G  
109	. A A A A A  
110	. A A A A A  
111	. T T T T T  
112	. T T T T T  
113	. A A A A A  
114	. A A A A A  
115	. C C C C C  
116	. A A A A A  
117	. T T T T T  
118	. A A A A A  
119	. G G G G G  
120	. T T T T T  
121	. A A A A A  
122	G G G G G G  
123	T T T T T T  
124	T T T T T T  
125	A A A A A A  
126	C C C C C C  
127	A A A A A A  
128	G G G G G G  
129	A A A A A A  
130	A A A A A A  
131	T T T T T T  
132	T T T T T T  
133	C C C C C C  
134	A A A A A A  
135	A A A A A A  
136	C C C C C C  
137	A A A A A A  
138	C C C C C C  
139	A A A A A A  
140	T T T T T T  
141	A A A A A A  
142	C C C C C C  
143	C C C C C C  
144	C C C C C C  
145	G G G G G G  
146	A A A A A A  
147	T T T T T T  
148	G G G G G G  
149	G G G G G G  
150	C A A C C C  2	 transversion
151	T T T T T T  
152	C C C C C C  
153	C G G G G G  
154	A A A A A A  
155	A C C A A A  2	 transversion
156	T T T T T T  
157	G G G G G G  
158	A A A A A A  
159	C C C C C C  
160	A A A A A A  
161	A A A A A A  
162	G A A G G G  2	 transition
163	C C C C C C  
164	G G G G G G  
165	T T T T T T  
166	G G G G G G  
167	A A A A A A  
168	G A A G G G  2	 transition
169	C C C C C C  
170	C C C C C C  
171	C C C C C C  
172	G G G G G G  
173	A A A A A A  
174	T T T T T T  
175	T T T T T T  
176	A A A A A A  
177	G G G G G G  
178	G G G G G G  
179	G G G G G G  
180	T T T T T T  
181	T T T T T T  
182	T T T T T T  
183	C T T C C C  2	 transition
184	A A A A A A  
185	G G G G G G  
186	C C C C C C  
187	T T T T T T  
188	- A A - - -  2	 indel
189	- G G - - -  2	 indel
190	- C C - - -  2	 indel
191	- T T - - -  2	 indel
192	C C C C C C  
193	T T T T T T  
194	C C C C C C  
195	C C C C C C  
196	G G G G G G  
197	G G G G G G  
198	C C C C C C  
199	G G G G G G  
200	C C C C C C  
201	G G G G G G  
202	A A A A A A  
203	G G G G G G  
204	A A A A A A  
205	A A A A A A  
206	T T T T T T  
207	G G G G G G  
208	C C C C C C  
209	C C C C C C  
210	A A A A A A  
211	T T T T T T  
212	T T T T T T  
213	G G G G G G  
214	A A A A A A  
215	T C C C C C  
216	T A A A A A  
217	A A A A A A  
218	C C C C C C  
219	C C C C C C  
220	G G G G G G  
221	A A A A A A  
222	G G G G G G  
223	A A A A A A  
224	C C C C C C  
225	C C C C C C  
226	G G G G G G  
227	C C C C C C  
228	G G G G G G  
229	A A A A A A  
230	C C C C C C  
231	G G G G G G  
232	A A A A A A  
233	G G G G G G  
234	C C C C C C  
235	A A A A A A  
236	C C C C C C  
237	C C C C C C  
238	C C C C C C  
239	C C C C C C  
240	G G G G G G  
241	A A A A A A  
242	T C C T T T  2	 transition
243	G G G G G G  
244	G G G G G G  
245	C C C C C C  
246	C C C C C C  
247	T T T T T T  
248	C C C C C C  
249	G G G G G G  
250	G G G G G G  
251	C C C C C C  
252	T T T T T T  
253	C C C C C C  
254	C C C C C C  
255	A A A A A A  
256	G G G G G G  
257	C C C C C C  
258	G G G G G G  
259	A A A A A A  
260	C C C C C C  
261	C C C C C C  
262	G G G G G G  
263	C C C C C C  
264	A A A A A A  
265	C C C C C C  
266	C C C C C C  
267	G G G G G G  
268	G G G G G G  
269	C C C C C C  
270	C C C C C C  
271	T T T T T T  
272	G G G G G G  
273	G G G G G G  
274	A A A A A A  
275	G G G G G G  
276	A A A A A A  
277	A A A A A A  
278	G G G G G G  
279	A A A A A A  
280	T T T T T T  
281	C C C C C C  
282	G G G G G G  
283	T T T T T T  
284	C C C C C C  
285	T T T T T T  
286	G G G G G G  
287	C C C C C C  
288	G G G G G G  
289	A A A A A A  
290	T T T T T T  
291	G G G G G G  
292	C C C C C C  
293	C C C C C C  
294	G G G G G G  
295	A A A A A A  
296	G G G G G G  
297	G G G G G G  
298	C C C C C C  
299	T T T T T T  
300	T G G G G G  
301	T G G G G G  
302	T A A A A A  
303	T A A A A A  
304	G G G G G G  
305	A A A A A A  
306	C C C C C C  
307	G G G G G G  
308	C C C C C C  
309	C C C C C C  
310	A A A A A A  
311	C C C C C C  
312	T T T T T T  
313	A A A A A A  
314	T T T T T T  
315	C C C C C C  
316	C C C C C C  
317	C C C C C C  
318	C C C C C C  
319	T T T T T T  
320	C C C C C C  
321	C C C C C C  
322	T T T T T T  
323	C C C C C C  
324	C C C C C C  
325	G G G G G G  
326	C C C C C C  
327	T T T T T T  
328	G G G G G G  
329	C C C C C C  
330	C C C C C C  
331	T T T T T T  
332	G G G G G G  
333	G G G G G G  
334	A A A A A A  
335	T T T T T T  
336	C C C C C C  
337	T T T T T T  
338	C C C C C C  
339	C C C C C C  
340	T T T T T T  
341	T T T T T T  
342	C C C C C C  
343	T T T T T T  
344	C C C C C C  
345	C C C C C C  
346	G G G G G G  
347	C C C C C C  
348	T T T T T T  
349	G G G G G G  
350	C C C C C C  
351	C C C C C C  
352	A A A A A A  
353	C C C C C C  
354	G G G G G G  
355	A A A A A A  
356	T T T T T T  
357	G G G G G G  
358	C C C C C C  
359	C C C C C C  
360	C C C C C C  
361	T T T T T T  
362	T T T T T T  
363	T T T T T T  
364	T T T T T T  
365	C C C C C C  
366	C C C C C C  
367	G G G G G G  
368	C C C C C C  
369	C C C C C C  
370	G G G G G G  
371	C C C C C C  
372	C C C C C C  
373	A A A A A A  
374	C C C C C C  
375	G G G G G G  
376	A A A A A A  
377	T T T T T T  
378	G G G G G G  
379	C C C C C C  
380	C C C C C C  
381	C C C C C C  
382	T T T T T T  
383	T T T T T T  
384	C C C C C C  
385	T T T T T T  
386	G G G G G G  
387	C C C C C C  
388	A A A A A A  
389	G G G G G G  
390	G G G G G G  
391	G G G G G G  
392	C C C C C C  
393	C C C C C C  
394	T T T T T T  
395	T T T T T T  
396	C C C C C C  
397	T T T T T T  
398	C C C C C C  
399	C C C C C C  
400	C C C C C C  
401	C C C C C C  
402	T C C C C C  
403	T T T T T T  
404	T C C C C C  
405	T C C C C C  
406	T T T T T T  
407	C C C C C C  
408	C C C C C C  
409	G A A A A A  
410	C C C C C C  
411	G G G G G G  
412	A A A A A A  
413	T T T T T T  
414	A C C C C C  
415	A T T T T T  
416	C C C C C C  
417	C C C C C C  
418	A T T T T T  
419	C C C C C C  
420	T T T T T T  
421	G G G G G G  
422	C C C C C C  
423	C C C C C C  
424	T T T T T T  
425	C C C C C C  
426	C C C C C C  
427	T T T T T T  
428	C C C C C C  
429	C C C C C C  
430	T T T T T T  
431	C C C C C C  
432	G G G G G G  
433	A A A A A A  
434	T T T T T T  
435	C C C C C C  
436	T T T T T T  
437	T T T T T T  
438	C C C C C C  
439	T T T T T T  
440	T T T T T T  
441	T T T T T T  
442	A A A A A A  
443	T T T T T T  
444	G G G G G G  
445	C C C C C C  
446	T T T T T T  
447	C C C C C C  
448	T T T T T T  
449	T T T T T T  
450	C C C C C C  
451	C C C C C C  
452	T T T T T T  
453	G G G G G G  
454	A A A A A A  
455	T T T T T T  
456	C C C C C C  
457	C C C C C C  
458	C C C C C C  
459	G G G G G G  
460	A A A A A A  
461	A A A A A A  
462	G G G G G G  
463	A A A A A A  
464	G G G G G G  
465	C C C C C C  
466	G G G G G G  
467	G G G G G G  
468	G G G G G G  
469	A A A A A A  
470	T T T T T T  
471	G G G G G G  
472	T T T T T T  
473	C C C C C C  
474	G G G G G G  
475	G G G G G G  
476	C C C C C C  
477	T T T T T T  
478	G G G G G G  
479	A A A A A A  
480	C C C C C C  
481	C C C C C C  
482	T T T T T T  
483	T A A A A A  
484	T G G G G G  
485	T C C C C C  
486	T C C C C C  
487	T G G G G G  
488	G A A G G G  2	 transition
489	G G G G G G  
490	G G G G G G  
491	G G G G G G  
492	A A A A A A  
493	G G G G G G  
494	G G G G G G  
495	G G G G G G  
496	A A A A A A  
497	G G G G G G  
498	A A A A A A  
499	G G G G G G  
500	T T T T T T  
501	G G G G G G  
502	G A A G G G  2	 transition
503	C C C C C C  
504	A A A A A A  
505	G G G G G G  
506	A A A A A A  
507	G G G G G G  
508	G G G G G G  
509	A A A A A A  
510	G G G G G G  
511	A A A A A A  
512	G G G G G G  
513	G G G G G G  
514	G G G G G G  
515	C C C C C C  
516	G G G G G G  
517	A A A A A A  
518	G G G G G G  
519	G G G G G G  
520	A A A A A A  
521	G G G G G G  
522	G G G G G G  
523	A A A A A A  
524	G G G G G G  
525	G G G G G G  
526	A - - A A A  2	 indel
527	G - - G G G  2	 indel
528	G - - G G G  2	 indel
529	C C C C C C  
530	A A A A A A  
531	C G G C C C  2	 transversion
532	T T T T T T  
533	G G G G G G  
534	C C C C C C  
535	C C C C C C  
536	T T T T T T  
537	T T T T T T  
538	C C C C C C  
539	T T T T T T  
540	G G G G G G  
541	C C C C C C  
542	T T T T T T  
543	T T T T T T  
544	C C C C C C  
545	C C C C C C  
546	C C C C C C  
547	A A A A A A  
548	G G G G G G  
549	A A A A A A  
550	C C C C C C  
551	C C C C C C  
552	T T T T T T  
553	C T T C C C  2	 transition
554	G G G G G G  
555	C C C C C C  
556	C C C C C C  
557	G G G G G G  
558	G G G G G G  
559	G G G G G G  
560	G G G G G G  
561	C G G C C C  2	 transversion
562	G G G G G G  
563	C C C C C C  
564	T T T T T T  
565	G G G G G G  
566	G G G G G G  
567	A A A A A A  
568	G G G G G G  
569	A A A A A A  
570	C C C C C C  
571	G G G G G G  
572	A A A A A A  
573	G G G G G G  
574	G G G G G G  
575	T T T T T T  
576	G G G G G G  
577	G G G G G G  
578	G G G G G G  
579	G G G G G G  
580	C C C C C C  
581	C C C C C C  
582	G G G G G G  
583	A A A A A A  
584	C C C C C C  
585	G G G G G G  
586	C C C C C C  
587	C C C C C C  
588	G G G G G G  
589	C C C C C C  
590	A A A A A A  
591	G G G G G G  
592	C C C C C C  
593	G G G G G G  
594	T T T T T T  
595	A A A A A A  
596	C C C C C C  
597	G G G G G G  
598	G G G G G G  
599	C C C C C C  
600	A A A A A A  
601	G G G G G G  
602	C C C C C C  
603	G G G G G G  
604	C C C C C C  
605	G G G G G G  
606	T T T T T T  
607	C C C C C C  
608	G G G G G G  
609	G G G G G G  
610	A A A A A A  
611	C C C C C C  
612	G G G G G G  
613	G G G G G G  
614	C C C C C C  
615	G G G G G G  
616	G G G G G G  
617	A A A A A A  
618	G G G G G G  
619	C C C C C C  
620	C C C C C C  
621	G G G G G G  
622	C C C C C C  
623	C C C C C C  
624	A A A A A A  
625	C C C C C C  
626	T T T T T T  
627	G G G G G G  
628	G G G G G G  
629	G G G G G G  
630	A A A A A A  
631	A A A A A A  
632	G G G G G G  
633	A A A A A A  
634	A A A A A A  
635	G G G G G G  
636	G G G G G G  
637	G G G G G G  
638	G G G G G G  
639	G G G G G G  
640	A A A A A A  
641	. G G G G G  
642	. G G G G G  
643	. A A A A A  
644	. G G G G G  
645	. A A A A A  
646	. A A A A A  
647	. G G G G G  
648	. G G G G G  
649	. A A A A A  
650	. G G G G G  
651	. A A A A A  
652	. G G G G G  
653	. C C C C C  
654	. T T C C C  2	 transition
655	. G G G G G  
656	. C C C C C  
657	. G G G G G  
658	. G G G G G  
659	. A A A A A  
660	. A A A A A  
661	. G G G G G  
662	. A A A A A  
663	. G G G G G  
664	. G G G G G  
665	. C C C C C  
666	. G G G G G  
667	. G G G G G  
668	. C C C C C  
669	. C C C C C  
670	. A A A A A  
671	. T T T T T  
672	. G G G G G  
673	. C C C C C  
674	. G G G G G  
675	. G G G G G  
676	. A A A A A  
677	. G G G G G  
678	. A A A A A  
679	. T T T T T  
680	. C C C C C  
681	. A A A A A  
682	. A A A A A  
683	. A A A A A  
684	. A A A A A  
685	. . C G G G  
686	. . . T T T  
687	. . . A A A  
688	. . . G G G  
689	. . . T T T  
690	. . . G G G  
691	. . . G G G  
692	. . . C C C  
693	. . . C C C  
694	. . . G G G  
695	. . . C C C  
696	. . . G G G  
697	. . . G G G  
698	. . . A A A  
699	. . . C C C  
700	. . . A C C  
701	. . . . . C  
702	. . . . . T  
703	. . . . . C  
704	. . . . . G  
705	. . . . . T  
706	. . . . . G  
707	. . . . . C