Contig Alignment

Base A B C D
1 C C . .
2 G G . .
3 T T . .
4 C C . .
5 T T . .
6 T T . .
7 G G . .
8 G G . .
9 G G . .
10 A A . .
11 A A . .
12 A A . .
13 A - . . 1 indel
14 T T . .
15 T T . .
16 T T . .
17 A A . .
18 A A . .
19 T T . .
20 T T . .
21 C C . .
22 G G . .
23 C C . .
24 T T . .
25 T T T .
26 T T T .
27 G G G .
28 A A A .
29 A A A .
30 G G G .
31 A A A .
32 G G G .
33 G G G .
34 A A A .
35 T T T .
36 G G G .
37 G G G .
38 G G G .
39 G G G .
40 C C C .
41 T T T .
42 T T T .
43 A T A . 1 transversion
44 C A C . 1 transversion
45 G A G . 1 transition
46 T T T .
47 T T T .
48 T T T .
49 G G G .
50 C C C .
51 G G G .
52 A A A .
53 A A A .
54 G G G .
55 C C C .
56 T T T .
57 G G G .
58 T T T .
59 T T T .
60 T T T .
61 A A A .
62 G G G .
63 C C C .
64 C C C .
65 G G G .
66 A A A .
67 C C C .
68 T T T .
69 T T T .
70 T T T .
71 T T T .
72 C C C .
73 G G G .
74 C C C .
75 G G G .
76 A A A .
77 A A A .
78 G G G .
79 A A A .
80 A A A .
81 A C A . 1 transversion
82 G T G . 1 transversion
83 A A A .
84 G G G .
85 A A A .
86 T T T .
87 G G G .
88 A A A .
89 G G G .
90 G G G .
91 A A A .
92 T T T .
93 C C C .
94 T T T .
95 T T T .
96 G G G .
97 A A A .
98 T T T .
99 G G G .
100 G G G .
101 T T T .
102 T T T .
103 G G G .
104 G G G .
105 G G G .
106 C C C .
107 T T T .
108 T T T .
109 G G G .
110 A A A .
111 C C C .
112 G G G .
113 C C C .
114 G G G .
115 G G G .
116 C C C .
117 T T T .
118 G G G .
119 G G G .
120 T T T .
121 A A A .
122 A A A .
123 A A A .
124 A A A .
125 C C C .
126 C C C .
127 A A A .
128 C C C .
129 G G G .
130 A A A .
131 T T T .
132 C C C .
133 T T T .
134 T T T .
135 G G G .
136 T T T .
137 A A A .
138 C C C .
139 A A A .
140 A A A .
141 G G G .
142 C C C .
143 T T T .
144 C C C .
145 A A A .
146 A A A .
147 G G G .
148 C C C .
149 T T T .
150 C C C .
151 G G G .
152 G G G .
153 A A A .
154 G G G .
155 A A A .
156 G G G .
157 A A A .
158 T T T .
159 C C C .
160 G G G .
161 T T T .
162 T T T .
163 A A A .
164 C C C .
165 C C C .
166 A A A .
167 C C C .
168 T T T .
169 A A A .
170 T T T .
171 C C C .
172 C C C C
173 C C C C
174 C C C C
175 A A A A
176 C C C C
177 T T T T
178 A A A A
179 T T T T
180 C C C C
181 G G G G
182 G G G G
183 G G G G
184 T T T T
185 T T T T
186 C C C C
187 A A A A
188 A A A A
189 T T T A 1 transversion
190 G G G T 1 transversion
191 T T T T
192 G G G G
193 G G G G
194 A A A A
195 G G G G
196 A A A A
197 C C C C
198 T T T T
199 G G G G
200 T T T T
201 A A A A
202 G G G G
203 A A A A
204 G G G G
205 T T T T
206 A A A A
207 T T T T
208 A A A A
209 A A A A
210 G G G G
211 A A A A
212 A A A A
213 C C C C
214 A A A A
215 T T T T
216 T T T T
217 A A A A
218 G G G G
219 T T T T
220 T T T T
221 T T T T
222 C C C C
223 A A A A
224 C C C C
225 A A A A
226 G G G G
227 T T T T
228 C C C T 1 transition
229 T T T T
230 G G G G
231 G G G G
232 G G G G
233 A A A A
234 T T T T
235 G G G G
236 T T T T
237 T T T T
238 G G G G
239 G G G G
240 T T T T
241 G G G G
242 G G G G
243 C C C C
244 C C C C
245 A A A A
246 A A A A
247 G G G G
248 A A A C 1 transversion
249 C C C C
250 A A A A
251 A A A A
252 G G G G
253 A A A A
254 T T T T
255 C C C C
256 A A A A
257 G G G G
258 A A A A
259 C C C C
260 C C C C
261 T T T T
262 C C C C
263 T T T T
264 G G G G
265 T T T T
266 G G G G
267 G G G G
268 A A A A
269 G G G G
270 G G G G
271 C C C C
272 A A A A
273 C C C C
274 T T T T
275 A A A A
276 C C C C
277 T T T T
278 T T T T
279 C C C C
280 C C C C
281 A A A A
282 G G G G
283 A A A A
284 A A A A
285 C C C C
286 A A A A
287 C C C C
288 T T T T
289 C C C C
290 A A A A
291 A A A A
292 G G G G
293 G G G G
294 C C C C
295 C C C C
296 T T T T
297 T T T T
298 A A A A
299 T T T T
300 T T T T
301 T T T T
302 T T T T
303 T T T T
304 G G G G
305 T T T T
306 T T T T
307 G G G G
308 T T T T
309 C C C C
310 G G G G
311 A A A A
312 T T T T
313 A A A A
314 G G G G
315 C C C C
316 A A A A
317 A A A A
318 T T T T
319 G G G G
320 A A A A
321 C C C C
322 A A A A
323 G G G G
324 A A A A
325 G G G G
326 A A A A
327 C C C C
328 C C C C
329 G G G G
330 T T T T
331 A A A A
332 T T T T
333 A A A A
334 G G G G
335 C C C C
336 A A A A
337 G G G G
338 A A A A
339 G G G G
340 G G G G
341 C C C C
342 A A A A
343 A A A A
344 G G G G
345 G G G G
346 G G G G
347 A A A A
348 T T T T
349 G G G G
350 A A A A
351 A A A A
352 C C C C
353 T T T T
354 T T T T
355 C C C C
356 A A A A
357 T T T T
358 A A A A
359 G G G G
360 G G G G
361 A A A A
362 T T T T
363 G G G G
364 C C C C
365 T T T T
366 T T T T
367 A A A A
368 A A A A
369 T T T T
370 G G G G
371 A A A A
372 G G G G
373 G G G G
374 A A A A
375 T T T T
376 G G G G
377 A A A A
378 A A A A
379 T T T T
380 T T T T
381 A A A A
382 C C C C
383 G G G G
384 T T T T
385 G G G G
386 A A A A
387 T T T T
388 G G G G
389 C C C C
390 T T T T
391 G G G G
392 T T T T
393 G G G G
394 T T T T
395 T T T T
396 G G G G
397 C C C C
398 T T T T
399 C C C C
400 G G G G
401 T T T T
402 A A A A
403 T T T T
404 T T T T
405 T T T T
406 G G G G
407 C C C C
408 A A A A
409 A A A A
410 A A A A
411 T T T T
412 A A A A
413 A A A A
414 G G G G
415 C C C C
416 A A A A
417 A A A A
418 G G G G
419 A A A A
420 C C C C
421 C C C C
422 T T T T
423 T T T T
424 C C C C
425 C C C C
426 A A A A
427 A A A A
428 A A A A
429 T T T T
430 G G G G
431 C C C C
432 A A A A
433 A A A A
434 T T T T
435 G G G G
436 A A A A
437 A A A A
438 T T T T
439 G G G G
440 C C C C
441 A A A A
442 G G G G
443 C C C C
444 T T T T
445 G G G G
446 A A A A
447 A A A A
448 A A A A
449 T T T T
450 T T T T
451 A A A A
452 C C C C
453 T T T T
454 G G G G
455 A A A A
456 T T T T
457 A A A A
458 A A A A
459 A A A A
460 C C C C
461 T T T T
462 T T T T
463 G G G G
464 G G G G
465 A A A A
466 T T T T
467 T T T T
468 A A A A
469 C C C C
470 A A A A
471 T T T T
472 T T T T
473 C C C C
474 A A A A
475 C C C C
476 T T T T
477 G G G G
478 C C C C
479 G G G G
480 G G G G
481 C C C C
482 A A A A
483 G G G G
484 C C C C
485 G G G G
486 A A A A
487 C C C C
488 A A A A
489 C C C C
490 T T T T
491 G G G G
492 G G G G
493 T T T T
494 A A A A
495 T T T T
496 A A A A
497 T T T T
498 A A A A
499 C C C C
500 A A A A
501 G G G G
502 A A A A
503 G G G G
504 C C C C
505 G G G G
506 C C C C
507 A A A A
508 T T T T
509 G G G G
510 T T T T
511 G G G G
512 C C C C
513 T T T T
514 A A A A
515 C C C C
516 A A A A
517 T T T T
518 C C C C
519 T T T T
520 G G G G
521 G G G G
522 T T T T
523 G G G G
524 A A A A
525 A A A A
526 G G G G
527 G G G G
528 C C C C
529 T T T T
530 T T T T
531 G G G G
532 T T T T
533 A A A A
534 T T T T
535 G G G G
536 A A A A
537 A A A A
538 G G G G
539 G G G G
540 G G G G
541 C C C C
542 T T T T
543 G G G G
544 G G G G
545 A A A A
546 T T T T
547 T T T T
548 G G G G
549 G G G G
550 C C C C
551 T T T T
552 C C C C
553 T T T T
554 C C C C
555 T T T T
556 A A A A
557 A A A A
558 C C C C
559 A A A A
560 A A A A
561 T T T T
562 A A A A
563 T T T T
564 T T T T
565 G G G G
566 T T T T
567 T T T T
568 A A A A
569 A A A A
570 C C C C
571 A A A A
572 A A A A
573 G G G G
574 G G G G
575 C C C C
576 T T T T
577 T T T T
578 G G G G
579 A A A A
580 A A A A
581 G G G G
582 C C C C
583 A A A A
584 A A A A
585 C C C C
586 A A A A
587 T T T T
588 G G G G
589 G G G G
590 A A A A
591 G G G G
592 G G G G
593 A A A A
594 A A A A
595 G G G G
596 C C C C
597 T T T T
598 T T T T
599 A A A A
600 N A A A
601 A A A A
602 T T T T
603 C C C C
604 T T T T
605 A A A A
606 T T T T
607 G G G G
608 A A A A
609 T T T T
610 C C C C
611 A A A A
612 G G G G
613 T T T T
614 A A A A
615 A A A A
616 A A A A
617 A A A A
618 C C C C
619 A A A A
620 T T T T
621 A A A A
622 T T T T
623 A A A A
624 T T T T
625 G G G G
626 T T T T
627 T T T T
628 A A A A
629 G G G G
630 T T T T
631 A A A A
632 A A A A
633 C C C C
634 A A A A
635 G G G G
636 T T T T
637 G G G G
638 T T T T
639 G G G G
640 G G G G
641 T T T T
642 A A A A
643 C C C C
644 T T T T
645 T T T T
646 T T T T
647 T T T T
648 G G G G
649 C C C C
650 T T T T
651 A A A A
652 G G G G
653 A A A A
654 T T T T
655 G G G G
656 C C C C
657 T T T T
658 T T T T
659 A A A A
660 T T T T
661 C C C T 1 transition
662 T T T T
663 G G G G
664 C C C C
665 T T T T
666 G G G G
667 A A A A
668 G G G G
669 T T T T
670 C C C C
671 A A A A
672 A A A A
673 G G G G
674 T T T T
675 G G G G
676 C C C C
677 T T T T
678 A A A A
679 C C C C
680 A A A A
681 C C C C
682 C C C C
683 T T T T
684 G G G G
685 G G G G
686 A A A A
687 T T T T
688 C C C C
689 A A A A
690 G G G G
691 T T T T
692 T T T T
693 A A A A
694 C C C C
695 C C C C
696 T T T T
697 T T T T
698 G G G G
699 T T T T
700 T T T T
701 A A A A
702 T T T T
703 T T T T
704 C C C C
705 T T T T
706 A A A A
707 C C C C
708 A A A A
709 T T T T
710 C C C C
711 T T T T
712 A A A A
713 T T T T
714 C C C C
715 G G G G
716 N T T T
717 T T T T
718 T T T T
719 G G G G
720 T T T T
721 A A A A
722 A A A A
723 T T T T
724 A A A A
725 T T T T
726 T T T T
727 T T T T
728 T T T T
729 T T T T
730 T T T T
731 T T T T
732 T T T T
733 T T T T
734 T T T T
735 T T T T
736 T T T T
737 T - - T 2 indel
738 T - - T 2 indel
739 T - - T 2 indel
740 T T T T
741 T T T T
742 G G G G
743 C C C C
744 A A A A
745 T T T T
746 A A A A
747 T T T T
748 T T T T
749 . G G G
750 . T T T
751 . T T T
752 . A A A
753 . A A A
754 . A A A
755 . T T T
756 . A A A
757 . T T T
758 . T T T
759 . C C C
760 . T T G 1 transversion
761 . A A G 1 transition
762 . T T G 1 transversion
763 . G G G
764 . T T T
765 . A A A
766 . A A A
767 . T T T
768 . A A A
769 . T T T
770 . C C C
771 . A A A
772 . T T T
773 . G G G
774 . A A A
775 . C C C
776 . G G G
777 . G G G
778 . C C C
779 . C C C
780 . T T T
781 . G G G
782 . N C C
783 . C A A 1 transversion
784 . A A A
785 . T T T
786 . A A A
787 . T T T
788 . G G G
789 . T T T
790 . G G G
791 . G G G
792 . T T T
793 . G G G
794 . T T T
795 . A A A
796 . A A A
797 . T T T
798 . A A A
799 . T T T
800 . T T T
801 . A A A
802 . T T T
803 . T T T
804 . G G G
805 . C C C
806 . G G G
807 . C C C
808 . A A A
809 . T T T
810 . A A A
811 . A A A
812 . T T T
813 . G G G
814 . G G G
815 . T T T
816 . C C C
817 . T T T
818 . T T T
819 . T T T
820 . T T T
821 . A A A
822 . . A A
823 . . A A
824 . . A A
825 . . G G
826 . . T T
827 . . T T
828 . . C C
829 . . A C 1 transversion
830 . . C .
831 . . G .
832 . . G .
833 . . G .
834 . . T .
835 . . G .
836 . . C .