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Whole Genome & Transcriptome Sequencing Analysis
Sequenced whole genomes of two isolates of
Phytophthora
The complete genome of
Phytophthora capsici
was structurally and functionally annotated
Blast homology based functional annotation revealed the presence of various proteins important for the survival of
Phytophthora
sp. in host plants and virulence associated proteins crucial for its infection
Conserved domain search was also conducted to make the functional annotation data accurate
Synteny plot between IISR 05-06 isolate and JGI has been conducted
Pairwise comparison synteny plot of gene models,
P. capsici
genome of JGI to
P. capsici
of IISR (05-06) with PROmer package of MUMmer
Developed Phytophthora Genome database
Blast2GO analysis for whole genome sequence is completed
Species tree and evolutionary tree estimation of sequenced
Phytophthora
isolates and other clade II species