Home
|
Indian Institute of Spices Research
Menu
Research
Spice Genomics
Bioinformatics of Pathogen
Whole Genome & Transcriptome Sequencing Analysis
Cheminformatics
Biodiversity Informatics
Research Highlights - 2013
R&D Activities
Ph.D. Programmes
Traineeship
Studentship
Online Databases
Software
Services
Consultancy
Bioinformatics Links
Training
Summer Training
Short term Training/Workshops
Seminars/Conferences
Others
Publications
Training Manuals
Research Papers
Presented Papers
Manuals in CD
Gallery
Video Gallery
Photo Gallery
Careers
Team
Contact Us
Whole Genome & Transcriptome Sequencing Analysis
Sequenced whole genomes of two isolates of
Phytophthora
The complete genome of
Phytophthora capsici
was structurally and functionally annotated
Blast homology based functional annotation revealed the presence of various proteins important for the survival of
Phytophthora
sp. in host plants and virulence associated proteins crucial for its infection
Conserved domain search was also conducted to make the functional annotation data accurate
Synteny plot between IISR 05-06 isolate and JGI has been conducted
Pairwise comparison synteny plot of gene models,
P. capsici
genome of JGI to
P. capsici
of IISR (05-06) with PROmer package of MUMmer
Developed Phytophthora Genome database
Blast2GO analysis for whole genome sequence is completed
Species tree and evolutionary tree estimation of sequenced
Phytophthora
isolates and other clade II species
Home
