LOCUS       YP_003204886             362 aa            linear   INV 09-MAR-2011
DEFINITION  cytochrome b, partial (mitochondrion) [Radopholus similis].
ACCESSION   YP_003204886
VERSION     YP_003204886.1  GI:258649598
DBLINK      Project: 40409
DBSOURCE    REFSEQ: accession NC_013253.1
KEYWORDS    .
SOURCE      mitochondrion Radopholus similis (banana-root nematode)
  ORGANISM  Radopholus similis
            Eukaryota; Metazoa; Nematoda; Chromadorea; Tylenchida; Tylenchina;
            Tylenchoidea; Pratylenchidae; Radopholinae; Radopholus.
REFERENCE   1  (residues 1 to 362)
  AUTHORS   Jacob,J.E., Vanholme,B., Van Leeuwen,T. and Gheysen,G.
  TITLE     A unique genetic code change in the mitochondrial genome of the
            parasitic nematode Radopholus similis
  JOURNAL   BMC Res Notes 2, 192 (2009)
   PUBMED   19778425
  REMARK    Publication Status: Online-Only
REFERENCE   2  (residues 1 to 362)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (18-SEP-2009) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 362)
  AUTHORS   Jacob,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2009) Ghent University, Molecular Biotechnology,
            Coupure Links 653, 9000 Gent, Belgium
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to CAY39376.
            COMPLETENESS: incomplete on the carboxy end.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..362
                     /organism="Radopholus similis"
                     /organelle="mitochondrion"
                     /db_xref="taxon:46012"
                     /country="Uganda"
                     /common="banana-root nematode"
     Protein         1..>362
                     /product="cytochrome b"
     Region          <46..198
                     /region_name="Cytochrome_b_N"
                     /note="Cytochrome b (N-terminus)/b6/petB:  Cytochrome b is
                     a subunit of cytochrome bc1, an 11-subunit mitochondrial
                     respiratory enzyme. Cytochrome b spans the mitochondrial
                     membrane with 8 transmembrane helices (A-H) in eukaryotes.
                     In plants and cyanobacteria; cl00859"
                     /db_xref="CDD:186225"
     Site            order(46,55..56,59..60,63..67,69..71,74,193..194)
                     /site_type="other"
                     /note="interchain domain interface [polypeptide binding]"
                     /db_xref="CDD:29347"
     Site            order(47,58,72,75..76,79,118..119,122..123,125..126,
                     174..175,178)
                     /site_type="other"
                     /note="heme bL binding site [chemical binding]"
                     /db_xref="CDD:29347"
     Site            order(55,70,73..74,77..78,80..81,83..84,87,94..99,
                     101..102,105..106,109,112..113,123,127..133,137..138,146,
                     198)
                     /site_type="other"
                     /note="intrachain domain interface"
                     /db_xref="CDD:29347"
     Site            order(82,86,89..90,92,104..105,108..109,111..112,185,
                     188..189,192,197..198)
                     /site_type="other"
                     /note="heme bH binding site [chemical binding]"
                     /db_xref="CDD:29347"
     Site            order(113,116..117,120..121,134,137..138,142,170,173)
                     /site_type="other"
                     /note="Qo binding site"
                     /db_xref="CDD:29347"
     Region          203..>277
                     /region_name="cytochrome_b_C"
                     /note="Cytochrome b(C-terminus)/b6/petD:  Cytochrome b is
                     a subunit of cytochrome bc1, an 11-subunit mitochondrial
                     respiratory enzyme. Cytochrome b spans the mitochondrial
                     membrane with 8 transmembrane helices (A-H) in eukaryotes.
                     In plants and cyanobacteria; cl00193"
                     /db_xref="CDD:185816"
     Site            order(203..211,214..216,218..219,222,225..226,229,
                     232..233,236..237,239,244,247..248)
                     /site_type="other"
                     /note="interchain domain interface [polypeptide binding]"
                     /db_xref="CDD:29371"
     Site            order(205,208..210,212,216,219..220,223..224,227,231..232,
                     234..236,239,243,245..246,248..252,254..256,259,261..264)
                     /site_type="other"
                     /note="intrachain domain interface"
                     /db_xref="CDD:29371"
     Site            order(212,220)
                     /site_type="other"
                     /note="Qi binding site"
                     /db_xref="CDD:29371"
     Site            order(259,261..262,265,268..269)
                     /site_type="other"
                     /note="Qo binding site"
                     /db_xref="CDD:29371"
     CDS             1..362
                     /gene="cytB"
                     /coded_by="NC_013253.1:14001..>15086"
                     /note="stop codon not determined"
                     /transl_table=5
                     /db_xref="GeneID:8445470"
ORIGIN      
        1 mssffnfllk nvkfptgslf fwsnsgsllf lillvqilsg lllvlyfdni syysfisvqy
       61 lmyevnfgwf irllhfngas ifffvlffhf lksllnygyr lvevyligmm illvlmgeaf
      121 lgyvllwsqm sywagvvitn lisvipffgf liknffwgsy vfgsnalkif fllhfilpfi
      181 iiffvlmhfy ylhyymstsn infnffldkn kfysyyiikd lfnffffiif flwllflpfk
      241 lgdslmfees dylvspihiv pewyflfvya ilraipskfl gvlflllsil ifiiylfyln
      301 ynflfdkfnk lilvfffnll vflsylgqcv veepfiflsq llsffyffvi lfvyfiylls
      361 kv
//