LOCUS       CAY39376                 362 aa            linear   INV 20-JAN-2011
DEFINITION  cytochrome b, partial (mitochondrion) [Radopholus similis].
ACCESSION   CAY39376
VERSION     CAY39376.1  GI:257143742
DBSOURCE    embl accession FN313571.1
KEYWORDS    .
SOURCE      mitochondrion Radopholus similis
  ORGANISM  Radopholus similis
            Eukaryota; Metazoa; Nematoda; Chromadorea; Tylenchida; Tylenchina;
            Tylenchoidea; Pratylenchidae; Radopholinae; Radopholus.
REFERENCE   1
  AUTHORS   Jacob,J.
  TITLE     Plant-parasitic nematodes: from genomics to functional analysis
  JOURNAL   Unpublished
REFERENCE   2
  AUTHORS   Jacob,J., Vanholm,B., Vanleeuwen,T., Devreese,B. and Gheysen,G.
  TITLE     The mitochondrial genome of Radopholus similis
  JOURNAL   Unpublished
REFERENCE   3  (residues 1 to 362)
  AUTHORS   Jacob,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2009) Jacob J., Ghent University, Molecular
            Biotechnology, Coupure Links 653, 9000 Gent, BELGIUM
FEATURES             Location/Qualifiers
     source          1..362
                     /organism="Radopholus similis"
                     /organelle="mitochondrion"
                     /db_xref="taxon:46012"
                     /country="Uganda"
     Protein         1..>362
                     /product="cytochrome b"
     Region          <46..198
                     /region_name="Cytochrome_b_N"
                     /note="Cytochrome b (N-terminus)/b6/petB:  Cytochrome b is
                     a subunit of cytochrome bc1, an 11-subunit mitochondrial
                     respiratory enzyme. Cytochrome b spans the mitochondrial
                     membrane with 8 transmembrane helices (A-H) in eukaryotes.
                     In plants and cyanobacteria; cl00859"
                     /db_xref="CDD:186225"
     Site            order(46,55..56,59..60,63..67,69..71,74,193..194)
                     /site_type="other"
                     /note="interchain domain interface [polypeptide binding]"
                     /db_xref="CDD:29347"
     Site            order(47,58,72,75..76,79,118..119,122..123,125..126,
                     174..175,178)
                     /site_type="other"
                     /note="heme bL binding site [chemical binding]"
                     /db_xref="CDD:29347"
     Site            order(55,70,73..74,77..78,80..81,83..84,87,94..99,
                     101..102,105..106,109,112..113,123,127..133,137..138,146,
                     198)
                     /site_type="other"
                     /note="intrachain domain interface"
                     /db_xref="CDD:29347"
     Site            order(82,86,89..90,92,104..105,108..109,111..112,185,
                     188..189,192,197..198)
                     /site_type="other"
                     /note="heme bH binding site [chemical binding]"
                     /db_xref="CDD:29347"
     Site            order(113,116..117,120..121,134,137..138,142,170,173)
                     /site_type="other"
                     /note="Qo binding site"
                     /db_xref="CDD:29347"
     Region          203..>277
                     /region_name="cytochrome_b_C"
                     /note="Cytochrome b(C-terminus)/b6/petD:  Cytochrome b is
                     a subunit of cytochrome bc1, an 11-subunit mitochondrial
                     respiratory enzyme. Cytochrome b spans the mitochondrial
                     membrane with 8 transmembrane helices (A-H) in eukaryotes.
                     In plants and cyanobacteria; cl00193"
                     /db_xref="CDD:185816"
     Site            order(203..211,214..216,218..219,222,225..226,229,
                     232..233,236..237,239,244,247..248)
                     /site_type="other"
                     /note="interchain domain interface [polypeptide binding]"
                     /db_xref="CDD:29371"
     Site            order(205,208..210,212,216,219..220,223..224,227,231..232,
                     234..236,239,243,245..246,248..252,254..256,259,261..264)
                     /site_type="other"
                     /note="intrachain domain interface"
                     /db_xref="CDD:29371"
     Site            order(212,220)
                     /site_type="other"
                     /note="Qi binding site"
                     /db_xref="CDD:29371"
     Site            order(259,261..262,265,268..269)
                     /site_type="other"
                     /note="Qo binding site"
                     /db_xref="CDD:29371"
     CDS             1..362
                     /gene="cytB"
                     /coded_by="FN313571.1:14001..>15086"
                     /transl_table=5
                     /db_xref="GOA:C7TQP0"
                     /db_xref="InterPro:IPR005797"
                     /db_xref="InterPro:IPR005798"
                     /db_xref="InterPro:IPR016174"
                     /db_xref="InterPro:IPR016175"
                     /db_xref="UniProtKB/TrEMBL:C7TQP0"
ORIGIN      
        1 mssffnfllk nvkfptgslf fwsnsgsllf lillvqilsg lllvlyfdni syysfisvqy
       61 lmyevnfgwf irllhfngas ifffvlffhf lksllnygyr lvevyligmm illvlmgeaf
      121 lgyvllwsqm sywagvvitn lisvipffgf liknffwgsy vfgsnalkif fllhfilpfi
      181 iiffvlmhfy ylhyymstsn infnffldkn kfysyyiikd lfnffffiif flwllflpfk
      241 lgdslmfees dylvspihiv pewyflfvya ilraipskfl gvlflllsil ifiiylfyln
      301 ynflfdkfnk lilvfffnll vflsylgqcv veepfiflsq llsffyffvi lfvyfiylls
      361 kv
//